Agromyces aureus: ATC03_01400
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Entry
ATC03_01400 CDS
T04413
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
agy
Agromyces aureus
Pathway
agy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
agy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ATC03_01400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agy03400
]
ATC03_01400
Enzymes [BR:
agy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ATC03_01400
DNA repair and recombination proteins [BR:
agy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ATC03_01400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANJ25618
UniProt:
A0A191WBP4
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All DBs
Position
328116..330623
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AA seq
835 aa
AA seq
DB search
MAEGARQLVEVDGRRLRLTNLDKVMYPETGMTKGEVIAYYAEIAPAMVPLVAGRPVTRLR
WVHGVGTADAPERPFFEKTLDEHAPEWLRRGVIRHSDGDKPYPIAGDRASLVWLAQQASL
EVHVPQWRFAADGQPANPDRIVFDLDPGEGMGLVECAEVARLVRALIGGMGLDAVPVTSG
SKGIHLYAALDGRQTSEQVSDVARELARALESDHPGLIVSSMSKIVRGGRVLIDWSQNNG
KKTTIAPYSLRGRARPTVAAPRTWEELDDPGLRHLEAHEVLERVASGIDPIASLADSGGG
AGGGAGPLATYLSMRTTGVTPEPMPGSSWAAPGGGAPGSSALSFVIQEHHARRLHYDFRL
ERDGVLKSWAVPKGVPEDPGVNHLAVQTEDHPLEYGGFEGTIPGGEYGAGSVTIWDAGTY
ATEKWRDDEVIVDVQGRVGGPLGAVRLALIRTGGEGEKSTWLLHRMKDQRPGEVVATVGS
RDGAGAPPRPAAGANPAGRGGSEASVSRPATPGAAEPITARPMLASPGTLGLVGAGDWAL
EYKWDGIRVLARTDGGGLRLVSRNGNDVTSRYPELAGLPGALRGDALVDGELVALDDDGR
PSFELLQSRMNLTRTREIQRLATSAPVRLLLFDVLEIAGDDVTDAPYRERRRRLERLVRP
GSGMPVEVPALATGSPADALAEARRLGLEGLVAKRPDSTYHPGTRSEQWLKLKLTRTQEV
VIGGYRVGVGSRTGRIRSLLVGIPGEHGLEYAGRVGSGLRELESERLLARLDAAVRETSP
FVDVPEADAVDAVWVEPQLVGEIELAEWTSTGVARHPRWRGLRPDKSPSEVVREA
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggccgagggtgcgcggcagttggtggaggtcgacggccggaggctccggctgacgaac
ctcgacaaggtcatgtatcccgagacgggcatgacgaagggcgaggtgatcgcctactac
gccgagatcgcgcccgccatggtgccgctcgtcgcgggtcgcccggtcacgaggctcagg
tgggtgcacggcgtcggaacggcggatgcccccgagcggccgttcttcgagaagacgctc
gacgagcacgcgcccgagtggctgcgccgcggggtgatccgccattccgacggcgacaag
ccgtatccgatcgccggcgatcgcgcctcgctcgtctggctcgcgcagcaggcgtcgctc
gaggtgcacgtgccgcagtggcggttcgcggccgacgggcagccggcgaatcccgaccgc
atcgtgttcgacctcgatccgggcgagggcatgggcctggtcgagtgcgccgaggtcgcg
aggctcgtgcgcgcgctcatcgggggcatggggctcgacgccgtgccggtcacgagcggc
agcaagggcatccacctctacgcggcgctcgacgggcggcagacctcggagcaggtgtcg
gatgtcgcgcgcgaactcgcgcgcgccctcgagtccgatcatccgggcctcatcgtgtcg
agcatgagcaagatcgtgcgcggcggccgggtgctcatcgactggagccagaacaacggc
aagaagacgacgatcgccccgtactcgctgcgcgggcgggcccgcccgacggtggccgcg
ccgcgcacgtgggaggagctcgacgaccccggcctgcggcacctcgaggcgcacgaggtg
ctcgagcgcgtggcatccggaatcgacccgatcgcctcgctcgcggactcgggcgggggc
gccgggggcggcgccgggccgctcgcgacgtacctctcgatgcgcacgaccggcgtcacg
cccgagccgatgccggggtcgagttgggcggcgcccggcgggggagccccgggttcgagc
gcgctgtcgttcgtgatccaggagcaccacgcgaggcgactgcactacgacttccggctc
gagcgcgacggcgtgctgaagagctgggcggtgcccaagggcgtgccggaggatccgggc
gtgaaccacctcgcggtgcagaccgaggaccaccccctggagtacggcgggttcgagggc
acgatccccggcggcgagtacggtgccgggtcggtgacgatctgggatgcgggcacctac
gcgaccgagaagtggcgcgacgacgaggtcatcgtcgacgtgcagggccgggtcggcgga
ccgctcggcgccgtgcggctcgcgctgatccgcacgggcggcgagggcgagaagagcacg
tggctgctgcaccgcatgaaggaccagcggccgggggaggtcgttgcgacggtcgggtct
cgagacggcgccggcgcgcctcctcgaccggcggccggcgcgaaccccgccggtcgagga
gggagcgaagcgagcgtctcgagaccagcgactccgggagcggccgagccgatcaccgcg
cgccccatgctcgcgtcgcccggcacgctcggcctcgtcggcgccggcgactgggcgctc
gagtacaagtgggacggcatccgcgtgctcgcgcgcaccgacggcgggggcctgcgcctg
gtcagccgcaacggcaacgacgtcacctccagataccccgagctcgccggcctgcccggc
gccctccgcggtgatgcgctcgtcgacggcgagctcgtcgcgctcgacgacgacggccgc
ccgagcttcgagctgctgcagtcgcgcatgaacctcacgcgcaccagggagatacagcgg
ctcgcgacatccgcccccgttcgcctgctgctcttcgacgtgctcgagatcgcgggcgac
gacgtgacggatgccccctaccgcgagcggcgtcgccggctcgagcggctcgtgcggccc
gggtcgggcatgcccgtggaggtgcccgccctggcgaccggatcgcccgccgacgcgctc
gccgaagcgcgccggctcggcctcgaggggctcgtggcgaagcggcccgactcgacgtac
caccccggaacacgttccgagcagtggctgaagctcaagctcacgcgcacgcaggaggtc
gtgatcggcggctaccgcgtcggcgtcggttcgcgaaccggccgcatccgctcgctgctc
gtcgggatcccgggcgagcacggactcgagtacgccggtcgcgtcggcagcggcctgcgc
gagctggagtccgagcgcctgctcgcgcgactcgacgccgccgtgcgggagacatcgccg
ttcgtcgacgtgcccgaggcggatgccgtcgatgcggtctgggtcgagccgcagctcgtc
ggcgagatcgagctcgccgagtggacgagcacgggcgtggcgcgccatccgcgctggcgg
gggctcaggcccgacaagtcgccgagcgaggtcgtgcgcgaggcgtga
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