Agromyces aureus: ATC03_06880
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Entry
ATC03_06880 CDS
T04413
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
agy
Agromyces aureus
Pathway
agy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
agy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATC03_06880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
agy03400
]
ATC03_06880
Enzymes [BR:
agy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATC03_06880
DNA repair and recombination proteins [BR:
agy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATC03_06880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANJ28777
UniProt:
A0A191WKN2
LinkDB
All DBs
Position
1603510..1607217
Genome browser
AA seq
1235 aa
AA seq
DB search
MILQGLNTALSRASTIERALGEALRSADFSAPDGIDAPLLAGLLQRRTEAGLAPALLVVT
ATSREGEQVRTAIAPYLDGAEVLEFPAWETLPHERLSPSAETVGRRLHALRRMHDWQEAG
SRHPLVVVASVRAALQPLADNLTAHAPIELVPGGRGYDLPEISRTLVDLAYARVDMVSRR
GEFALRGGILDVFPPTADHPVRVEFFGDEVEELRAFSVADQRSLPEVVERVVLAPSRELL
LTPAVRQRAREMVHEFPSMAGMLEKVAEGIPVEGMESLAPALLERLVPLAHYLPVGAAVA
VLQPERVSGRAVSLAETNREFLGAAWSAATAGADAPIDLASGDFLTVRAFREAVLFSAPG
EPDPQRVWWTFTNFDMGDAAAVVAASAGSEAAEAASRLASEYVRVAADAMPSFAGNVAGA
VEHVGQRLRDGWSLVVASEGQGLVERARDVLAEAGLAARTVEVVPDELEPGVAYLVRAGA
ARGFEVPEAKLGLVSEAEFYGRAAGYDARRATKLAARRRNVVDPLQLKAGDFVVHQTHGI
GRFVEMVQREVATGSRPTGPSRRAGIAQQPKAVREYLVLEYAASKRGQAGDRLFVPTDQL
DLLSRYVGGEAPSLSKMGGSDWAQAKGKARRAVRDIAVELVKLYSARMAAKGHAFGPDTP
WQHELEEAFPFTETPDQLQTIDEIKADMERPIPMDRLLAGDVGFGKTEVAVRAAFKAIQD
GKQVAMLVPTTLLVKQHFETFTERFAGFPVHVRALSRFQSDKEARETVAGLGDGTVDMVI
GTHRILTEKVKFKDVGLVIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRSLEMAVT
GIREMSTLATPPEDRHPILTFVGPYSEQQVAAAIRREMLREGQVFFVHNRVSSINRVAAQ
LSELVPEARIAVAHGQLNEHVLEQIVNDFWERKFDVLVSTTIIETGLDISNANTIIIDRA
DKYGLSQLHQLRGRVGRGRERAYAYFLWDPAKPLSETAHDRLSTIAANNDLGSGMQVALK
DLEIRGAGNLLGGEQAGHIAGVGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPIDAHIP
EEYVDSERLRLEAYQKLSAASGPAAKDEQIGQVLDELVDRYGAPPEAVQNLVAVSRLRRL
AQFAGLSDVIATGTKLRIGPANIPDSRRVRLERMYPGAKLVTASDVILVPFPVRGGEMPG
DADLIEWVTNLITAIFPIPERADAAGSAPAAGGAA
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
gtgattctgcagggcttgaacacggcgctttcgcgcgcctccaccatcgaacgcgccctc
ggcgaggccctgcggagcgccgatttctcggcgcccgacggcatcgacgcgccactgctc
gcggggctcctccagcgccgcaccgaggcggggctcgccccggcgctgctcgtcgtcacc
gcgaccagccgcgagggcgagcaggtccgcaccgcgatcgccccgtacctcgacggagca
gaggtgctcgagttccccgcatgggagacgttgccgcacgagcgcctgagcccctcggcc
gagaccgtcggtcgccggctgcacgccctgcggcgcatgcacgactggcaggaggccggc
tcgcggcatccgctcgtcgtggtcgcgtcggtgcgcgccgctctgcagccgctcgccgac
aacctcaccgcgcacgcgcccatcgagctcgtacccggcgggcggggctacgacctgccc
gagatctcccgcacgctcgtcgacctcgcctacgcgcgcgtcgacatggtctcgaggcgc
ggcgagttcgcgctgcgcggcgggatcctcgacgtgttcccgccgacggccgaccacccc
gtgcgcgtcgagttcttcggcgacgaggtcgaagagctgcgcgcgttctcggtcgccgac
cagcgttcgctgcccgaggtcgtcgagcgggtcgtgctcgcgccgagccgcgagctgctg
ctcaccccggccgtgcgccagcgcgcccgtgagatggtgcacgagttcccgagcatggcg
ggcatgctcgagaaggtcgccgagggcatcccggtcgagggcatggaatccctggcgccc
gcgctgctcgaacgactcgtgccgctcgcgcactacctgccggtcggcgcggccgtcgcc
gtgctgcagcccgagcgcgtctccggtcgcgcggtcagcctcgccgagacgaaccgcgag
ttcctcggcgcggcgtggagcgcggccacggccggcgccgacgcgcccatcgacctcgcg
tccggcgacttcctcacggtgcgggcgttccgcgaggccgtgctcttcagcgcgcccggc
gaacccgacccgcagcgcgtgtggtggaccttcacgaacttcgacatgggcgatgccgcg
gccgtcgtggcggcgtccgcgggcagtgaggcggccgaggccgcgtcccgcctcgcctcc
gagtacgttcgcgtcgccgccgatgcgatgccgagcttcgcgggcaacgtcgcaggtgcc
gtcgagcacgtcggtcagcgcctgcgcgacggctggagtctcgtcgtggcatccgagggt
caggggctcgtcgaacgcgcccgtgacgtgctcgccgaggccgggctcgcggcgcgcacc
gtcgaggtcgtgcccgacgaactcgagccgggcgtcgcctacctcgtccgcgccggcgca
gcccgcgggttcgaggtgcccgaggccaagctggggctcgtctccgaggccgagttctac
gggcgagcggccggctacgacgcgcgacgggccaccaagctcgcagcccgccgacgcaac
gtcgtcgacccgctgcagctcaaggccggcgacttcgtcgtgcaccagacgcacggcatc
ggccgcttcgtcgagatggtgcagcgcgaggtcgcgaccggcagccggccgacgggtccg
agccgccgggcgggcatcgcccagcagccgaaggccgtgcgagagtacctcgtgctcgag
tacgcggcctcgaagcgggggcaggcgggcgaccggctcttcgtgccgaccgaccagctc
gacctgctctcgcgctacgtgggcggcgaggccccttcgctctcgaagatgggcggcagc
gactgggcacaggcgaagggcaaggcacgcagagccgtgcgcgacatcgccgtcgaactc
gtgaagctctactcggcgcgcatggcggccaagggccacgccttcggccccgacactccg
tggcagcacgagctcgaggaggcgttcccgttcaccgagacgcccgaccagctgcagacg
atcgacgagatcaaggccgacatggagcggccgatccccatggatcgcctgctcgcgggc
gacgtcggcttcggcaagaccgaggtcgccgtgcgtgcggccttcaaggcgatccaggac
ggcaagcaggtcgcgatgctcgtgcccaccacgctgctcgtcaagcagcacttcgagacc
ttcaccgagcgtttcgccgggttccccgtgcacgtgcgcgccctcagccggttccagagc
gacaaggaggcgcgcgagaccgtcgccgggctcggtgacggcacggtcgacatggtcatc
ggcacgcaccgcatcctcaccgagaaggtgaagttcaaagacgtgggcctcgtcatcatc
gacgaggagcagcggttcggcgtcgagcacaaggacgccctgaagaagctcaagaccaac
gtcgacatcctggcgatgagcgcgacgccgatcccgcgctcgctcgagatggccgtcacc
ggcatccgcgagatgtccaccctcgccacgccgccggaagaccggcatccgatcctcacg
ttcgtcggcccgtactccgagcagcaggtcgccgccgccatccgtcgcgagatgcttcgc
gaggggcaggtcttcttcgtccacaaccgggtctcgtcgatcaaccgggtcgcggcgcag
ctgtcggagctcgttcccgaggcgcgcatcgcggtcgcgcacggccagttgaacgagcac
gtgctcgagcagatcgtgaacgacttctgggagcgcaagttcgacgtgctcgtctcgacg
accatcatcgagaccggcctcgacatctccaacgcgaacacgatcatcatcgaccgggcc
gacaagtacggcctcagccagctgcaccagcttcgcggccgcgtcggccgcgggcgcgag
cgcgcctacgcgtacttcctctgggacccggcgaagccgctcagcgagacggcgcacgac
cggctctcgaccatcgcggccaacaacgacctcggctccggcatgcaggtggccctgaag
gaccttgagatccgcggggcgggcaacctgctcggcggtgagcaggccgggcatatcgcg
ggggtcggcttcgacctgtacctccgcatgatcggcgaggccgtctcgaccttccgcggc
gacgtcgccgaagggcagaccgagctgcggctcgagctgcccatcgacgcgcacatcccc
gaggagtacgtcgactccgagcgcctgcgcctcgaggcctaccagaagctctcggcggcg
agcggcccggccgcgaaggacgagcagatcggccaggtgctcgacgagctcgtcgaccgc
tacggcgccccgcccgaggcggtgcagaacctcgtcgccgtctcgaggctgcgtcggctc
gcgcagttcgccgggctctccgacgtcatcgccacgggcaccaagctccgcatcgggccc
gcgaacatccccgattcgcgccgcgtacgcctcgagcgcatgtacccgggcgcgaagctc
gtcacggcgagcgacgtcatcctcgtgccgttcccggtgcgcggcggcgagatgccgggc
gacgccgacctcatcgagtgggtgacgaacctcatcaccgcgatcttcccgattcccgag
cgggcggatgccgcgggttcggcgcccgccgcgggcggcgccgcctga
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