Aeromonas hydrophila subsp. hydrophila ATCC 7966: AHA_2439
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Entry
AHA_2439 CDS
T00424
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aha
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Pathway
aha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AHA_2439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aha03019
]
AHA_2439
03400 DNA repair and recombination proteins [BR:
aha03400
]
AHA_2439
Enzymes [BR:
aha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AHA_2439
Messenger RNA biogenesis [BR:
aha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AHA_2439
DNA repair and recombination proteins [BR:
aha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AHA_2439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABK39274
UniProt:
A0KL03
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All DBs
Position
2689016..2690944
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AA seq
642 aa
AA seq
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MISSLLTRHFGFDRLRPGQEAVISRLLAGQSAAAIFPTGSGKSLCYQLPALALPHLTLVI
SPLIALMHDQLAFLRSKGIAAATLDSSLTPEESRRVMQQASDGQLKILMISVERLKNERF
RRFIQQVPLSMLVVDEAHCISEWGHNFRPDYLKLPDYRRELQIPQVLLLTATATPAVMAD
MQAKFEIEDEGLIVTGFYRANLDLAVVPLPDEARDGWLHVELARDPAAPTIIYVTLQHTA
EQCAARLQQAGIKARAYHAGLDATLRSQIQHDFMAGKLDCIVATIAFGMGIDKADIRRVI
HYDLPKSIENYSQEIGRAGRDGLPSRCMVLANHSQLPVLENFVYGDTPDRAAIVTLLEIL
QQSGSEWEFGLLRLSNDTNIRQLPLKTLLVYLEMAGIIAPAYSYFAEYRFKFVLDKADIL
ARFNPARRQFLEQVFASAPLARSWCTMDFEALWQGYQGERSRAAAALDYLQQQGWIELES
KQMTEVYRVLQQDLDIATLADQLHGLFEKKEQSELARLQALLGFFTSSSCLSHELARYFA
DQAAPTHCGHCSVCRGEVAQLPSLPSRTLPNEQGLRAWCEPLVALCHSRDPRILTRFLCG
ITTPLTTRLKARSLAGFGQLASHPFADVLTAVSNIYAARQQE
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgatctcatccctgttgacccgtcacttcggcttcgatcggttaagaccgggacaggag
gcggtgatcagccgattactggctggccagagtgccgccgccatcttccccaccggctcc
ggcaagtccctctgttatcagttgccggcgcttgccctgccccatctgaccctggtgatc
tcgccgctgatcgcgctgatgcacgatcagctcgccttccttcgcagcaaagggatcgcc
gccgccaccctcgactcgagcctgacgccggaagagagccgccgggtgatgcagcaggcc
agcgatggccagctcaagatcctgatgatctcggtagagcggctcaagaacgaacgcttt
cgccgtttcatccagcaggtgccgctgtcgatgttggtggtggacgaggcccactgcatt
tcggagtggggccacaactttcgccccgattatctcaagctgccggattaccgccgtgaa
ttgcagatcccgcaggtgttgctgttgacggccaccgccactccggcggtcatggccgac
atgcaggccaaattcgagatcgaggatgaggggctcatcgtcaccggcttttatcgcgcc
aacctggacttggccgtggtaccgctgcctgacgaggctcgcgatggttggctgcatgtc
gagctggctcgtgaccccgccgcaccgaccatcatctatgtcaccctgcagcacaccgca
gagcagtgcgccgcccgcttgcaacaagccgggatcaaggcgcgcgcctatcacgccggg
ctcgatgccaccctgcgcagccagatccagcacgacttcatggccggcaagctggactgc
atcgtggcaaccatcgccttcggcatggggatcgacaaggccgatattcgccgggtgatc
cattacgatctgcccaaatccatcgaaaactacagtcaggagataggccgcgccggccgg
gatggtctgccttcccgctgcatggtactggccaatcacagccagttgccggtgctggaa
aacttcgtctatggcgacaccccggacagagcggccatcgtcaccttgctcgagatcctg
caacaaagcggcagcgagtgggaatttggtttgctgcgcctctccaacgacaccaatatc
cgccaactgccgctcaagaccctgctggtctacctggagatggcgggcatcatagcgccg
gcctacagctattttgccgagtaccgcttcaagttcgtgctggacaaggccgacatcctg
gcccggttcaatccggcgcgacgccagtttctggagcaagtattcgccagtgccccactg
gcgcgcagctggtgcaccatggacttcgaggcgctctggcaaggttatcagggagagcgg
tcgcgagccgctgccgcgctggattatctgcagcagcaaggctggattgagctggagagc
aagcagatgaccgaggtctatcgggtgctgcaacaagatctggacatagcaacgctggcc
gatcagctgcacggactgtttgaaaagaaagagcaaagcgagctggcgcgtctgcaggca
ttgctggggttctttacctccagcagttgcctgagccatgagctggcccgctactttgcc
gatcaggccgcgcccacccattgcgggcactgctcggtttgtcggggagaggtggcgcag
cttccctccttacccagccggacactccccaatgaacaggggctcagagcctggtgcgag
ccactggtggccctgtgtcacagccgggatccccgcatcctgacgcgtttcctgtgcggc
atcaccaccccgctcaccacccggctcaaggccagaagcctggctggattcggccagctg
gcgtcccacccctttgccgatgtactgacggccgtatccaacatttatgccgctcgccaa
caggaataa
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