Adlercreutzia hattorii: ADCFC_11450
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Entry
ADCFC_11450 CDS
T07732
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahat
Adlercreutzia hattorii
Pathway
ahat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADCFC_11450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahat03400
]
ADCFC_11450 (mfd)
Enzymes [BR:
ahat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADCFC_11450 (mfd)
DNA repair and recombination proteins [BR:
ahat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ADCFC_11450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
AAA_22
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BCA88526
UniProt:
A0A6F8SM07
LinkDB
All DBs
Position
1386587..1390462
Genome browser
AA seq
1291 aa
AA seq
DB search
MLIDSLAFTLEKSGCLDTFWGKLDAGEDATLGVAASARPFLVAARFAASPQPTLVVVAGE
DAAVAFARNVAAYVGEERVLRFPERADVPFDPKPADRRVIAQRMEAAWALKSGREVVVVA
SARALLRLLPPVEANAARPIALTAGEELEDMGVEGVEELGDLPRALEAAGYANTGELDGP
GTFAVRGGTVDVFPGNLSYPVRLDFFGDELDEIRRIVPATGQTISSLPSVEIYPVSEFPT
SARALADARRALEKPALTNPALRDVLEKLEGGLRFDGADVVLPFLYKKPVTLGAYAGPGT
CAALIEPRSLFDDAAHAAEDIAERARGTNIALAGLFAEPAALDFGGEVRATYVSIMRVGG
ALDDELPVKRVDVAGMPDKIFGKLKSLAADRYTIVFSAPNLRARETMRHAFVDHGIPIQI
VQPENLDDGESQPESTEADTPAQAKRRLRRGVVNIVDNDIPLGMIIPKAHLALVSAADTQ
GSRAASRRVRSRVDATEVTFPFKPGDYVVHAAHGIAFFRDLVRREVDGTERDYLQLEYAE
GDKLFVPVEQLDRVTRYVGPEGGSPRLTRLNTSDWARAMNRARKATKKLAFDLVDVYARR
AATQGFRFSPDTPWQREMEEAFPYTETRDQLAAIADVKHDMESPRPMDRLICGDVGFGKT
EVALRAAFKATQDGKQVMVLCPTTILAQQHYTSFKDRFDPFDVTVEVLSRFRTPEQQKAA
LEGFAKGDVQVLVGTHRLLSRDVNPHDLGLVIIDEEQRFGVQHKEQLKNLRESIDVLTLS
ATPIPRTMQMSLSGVRDMSLILTPPDERRPVEVHVGEWDPDVVSAAIRYELARGGQVYYV
SNRVRSIDEAVDRVHAAAGEARVGVAHGQMTKEELEQVMEEFAAGELDVLVATTIIESGI
DNPHTNTLIIEDAQRLGLAQMYQLKGRVGRSSTQAYAYFMFPENVPLTEEAAARLTAINE
HQDLGSGMRIAMRDLEIRGAGSMLGAEQSGNMSAVGFDLFAQMLNQAVNETREGVGASGE
LPPALSDITVNIPGHAYLPEEYIPDADARVLWYRKLASASTVEEVAALREDMLAEAPEMP
EAAANLFERAWLKAFANEHGVKLISVAAGKLIVEPIDIPAAAMKPLRRAAGRYQTDKRKL
TLPLRYFSEEERDNLLPAIVHFLEKLFGETDAEEGAPFAEMEGGASGSASDPASSVPRGI
ATDPAAGVSKNARTGSAKAVSQNAPTDSRRGGPRSALGQDPAKGSASAAPAPTRPTGRSE
RRANNLAKGDAARERLAAKRAARAAKREEGR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcatcgattcgctcgccttcaccttggagaagtctggctgcttggatacgttctgg
ggaaagctcgacgccggcgaagacgccaccttgggcgtggccgcctcggcgcggcccttc
ctcgtggcggcccgcttcgccgcctcgccccagcccacgctcgtcgtcgtggccggcgag
gacgccgccgtcgctttcgctcgcaacgtggccgcctatgtgggggaggagcgcgtgctg
cgcttcccggagcgtgccgatgtccccttcgacccgaagccggccgaccgtcgcgtcatc
gcccagcgcatggaggccgcttgggcgctcaagagcggccgcgaagtcgtggtggtggcg
agcgctcgggcgcttctgcgtctgttgccgccggtggaagcgaacgccgcgcggccgatc
gcgcttacggctggcgaggagcttgaggatatgggcgtcgagggcgtcgaggagctggga
gacctgccccgcgccctggaagccgccggctacgccaacaccggcgagctggacggcccg
ggcaccttcgccgtgcgcggcggcaccgtggacgtgttccccggcaacctgtcctatccg
gtgcgcctcgacttcttcggcgacgagctggacgagatccgccgcatcgtgccagccacg
ggccagaccatctcctcgctgccctctgtggagatctaccccgtctcggaatttcccacc
tccgcccgtgcgctggccgacgcgcgccgcgccctggagaagccggcgctcaccaacccg
gctctgcgcgacgtgctggagaagctcgaaggggggcttcgcttcgacggcgccgatgtg
gtgctgccgtttctgtacaagaaaccggtgacgctgggcgcctatgcggggccgggcacg
tgcgcggccctcatcgagccgcgctcgctcttcgatgacgcggcccatgccgcggaggac
atcgccgagcgcgcccggggtaccaacatcgcgctcgcgggcctgttcgccgagccggcg
gcgttggacttcgggggcgaggtgcgggccacttatgtctccatcatgcgggtcggcggc
gcgctggacgacgagctgccggtgaagcgcgtcgatgtggccgggatgcccgacaaaata
ttcggcaagctgaagagcctcgccgccgaccgctacaccatcgtcttctcggctccgaac
ttgcgcgcccgcgagaccatgcgccacgccttcgtcgatcacggtattcccatccagatt
gtgcaaccggaaaatttggacgatggcgagtcgcaacccgaaagcacagaggccgacacc
ccggcccaggccaaacgccgcctgcggcggggggtcgtcaacatcgtggacaacgacatc
ccgctcggcatgattatcccgaaggcgcatctcgcgctggtgtcggccgccgacacccag
ggttcgcgcgccgccagccgccgcgtgcgctcccgcgtggatgccaccgaggtcaccttt
ccgttcaagcccggcgactacgtggtgcacgcggcccacggcatcgcttttttccgcgat
ctggtgcgccgcgaggtggacggcaccgagcgcgactacctgcagctggaatacgccgag
ggcgacaagctgttcgtccccgtggagcagctcgaccgcgtgacccgttacgtggggccg
gaaggcggcagcccccgtcttacccgcctgaacacgagcgactgggctcgggccatgaac
cgcgcccgcaaggccaccaagaagctcgccttcgacctcgtggacgtgtacgcccgccgc
gccgccacccagggcttccgcttctcgccggacaccccctggcagcgcgagatggaggag
gccttcccctacaccgagacccgcgaccagctcgccgccatcgccgatgtgaagcacgac
atggaatcgccgcgaccgatggaccgtctcatctgcggagacgtcggcttcggcaagacc
gaggtggccctgcgcgccgccttcaaggccactcaggacggcaagcaggtgatggtgctc
tgtccgaccaccattctggcccagcagcactacacctccttcaaagaccgcttcgacccc
ttcgacgtcaccgtggaagtgctctcgcgcttccgcacgcccgagcagcagaaagcagcg
ctggagggcttcgccaaaggcgacgtgcaggtgctcgtgggcacgcaccggctgctctcg
cgcgatgtgaacccgcacgatctgggactggtcatcatcgacgaggagcagcgctttggc
gtgcagcacaaagagcagctgaagaacttgcgcgagtccatcgacgtgctgacgttgtcg
gccacccccatcccgcgcaccatgcagatgtcgctgtcgggggtgcgcgatatgtcgctc
atcctaacgccgcccgacgagcggcgccccgtagaggtgcacgtgggggagtgggatccc
gacgtcgtatcggccgccatccgctacgagttggcgcggggcggccaggtgtactacgtg
tccaaccgcgtgcgctccatcgacgaggccgtggaccgcgtgcatgccgccgccggggag
gcgcgggtcggcgtggcccacgggcagatgaccaaggaggagctggagcaggtgatggag
gagttcgccgccggcgagctggacgtgctcgtggccaccaccatcatcgagagcggcatc
gacaacccccacaccaacacgctcatcatcgaggacgcccagcgtctgggcctcgcccag
atgtaccagctgaagggccgcgtgggccgctcgtccacccaggcctacgcctacttcatg
ttccccgagaacgtgcctttgaccgaggaggccgccgcgcgcctcaccgccatcaacgag
caccaggatctgggcagcggcatgcgcatcgccatgcgcgatctggagatccgcggcgcc
ggttctatgctgggcgccgagcagtccggcaatatgtcagccgtgggcttcgacctgttc
gcccagatgctcaaccaggccgtgaacgagacccgcgagggcgtgggcgcctcaggcgag
ctgccgccggcgctttccgacatcaccgtgaacatccccggtcacgcctacctgcccgag
gagtacattcccgacgccgacgcccgggtgctgtggtaccgcaagctggcttcggcctcc
acggtggaggaggtggccgccctccgcgaggatatgctcgcggaggcccccgagatgccc
gaggcggcggccaacctcttcgagcgcgcatggctgaaggccttcgccaacgagcacggg
gtcaagctcatctccgtggcggcgggcaagctcatcgtggagcccatcgacatccccgct
gctgccatgaagcccctgcgccgcgcggccggccgctaccagacggacaagcgcaaactg
acgctgcctttgcgctacttctcggaggaggaacgcgacaacctgcttccggctatcgtg
cacttcctggagaaactcttcggcgagaccgacgccgaagagggggctcctttcgcggag
atggagggcggcgcttccggctctgcctccgatcctgcctcttctgtcccccggggtatc
gcaacagatcccgctgcgggcgtttccaaaaatgctcggacaggctctgctaaggctgtt
tcgcaaaatgccccgaccgattcccgcaggggcggaccgaggtccgccctgggccaggac
ccggccaagggctcagcgtcagccgctcccgctcccactcgccccacggggcgcagcgaa
cggcgcgccaacaacctcgccaagggcgatgccgcccgcgagcgtttggccgccaagcgc
gccgcccgtgccgccaagcgcgaagaggggcgatag
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