Aristaeella hokkaidonensis: JYE49_12915
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Entry
JYE49_12915 CDS
T09243
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahc
Aristaeella hokkaidonensis
Pathway
ahc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JYE49_12915 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahc03400
]
JYE49_12915 (mfd)
Enzymes [BR:
ahc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYE49_12915 (mfd)
DNA repair and recombination proteins [BR:
ahc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JYE49_12915 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QUC66738
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All DBs
Position
2879937..2883542
Genome browser
AA seq
1201 aa
AA seq
DB search
MLETAQGKTTAVAGVNQTLAAVIACIAAEKGKKTLLVADNDLKAARAADDVRQLTGEGCC
LPGGEIDLTRAAGSLESNWRRLEALAAVTEGKVRILCAGAEAMAQRMGRPEPFRALSLTL
KPGDVFPPADLARRLSRMGYDRVGMVEGKGQFAQRGSILDVYPPALAQGLRIEFFDDEID
GIREFDCISQRSLGDVPEAVLTPACEVLLEEDEYPEAARRMREAINDQPDTDIGKDLLFD
DLPPLPDDEDDAELFDKKIAPKVREKQYKEQKELEADRRMERLRQDAETLEQGLPFRRMR
AWLPVLTDKTASVCDWFEPDLVLLCEPDRLRNRIEERLQGFAEDLQSAITRREAVTDQES
LLKDWETVLKELKPYPKGLLTEILLGLGGIKPDNTVTVEATGIQGYGGQMRALKNDIALW
REHGYRIYLLSGGSSRGKRLEESLKELEEKTEFREELSAAKPGEAVILPITLSGGFIIRG
GEGCPGTAVVSDADIWGEGYRRSKSRKRSGERISTFTDLKVGDYVVHEDHGVGIYQGITR
IQSEGSWHDYLLIHYGGNDKLYVPVEQLERVQRYIGNPNQAPKLNRLGGGEWARQKGKVK
EGLKALAFDLKALYAERSQNTGHAFGPDTDWQREFEDEFPWELTPDQAQSVQEIREDMES
DRNMDRLLCGDVGYGKTEVSLRAAFKAIADNKQVALLAPTTILVQQHYNTIVKRFRHTGA
RVDFLSRFRTPAEQKDVLAKLAMGDIDLIVGTHKLLGKDVKFKDLGLLIVDEEQRFGVAH
KEVIKNMKRQVDVLTLSATPIPRTLHMSMTGIRDMSVLETPPEERIPVQTVVTEYSDALI
RDAILRELGRGGQVYFLYNRVRSIGSFYERLRALVPEARVGVAHGQMKEHQLEDVMLDFY
NGNYDVLLCTTIIENGLDVPNANTLIVYDAERFGLSQLYQLRGRVGRSNRQAYAYFTVRA
DHMLTETAQQRLTAIREFTEFGAGFRIAMRDLEIRGAGNILGPEQHGHLATVGYDMYCKL
MEETLNEVQGRQTARELETRVDLRVDAFLPSDYVAEEKQRMEMYKRIASVVTDEDRADVT
DELIDRYGDLPPAAETLLDVSQLRALCNRLGVSQVTRGKEGLIMKVDERYVPDPACLLQA
ISETDGRLILSARAPARMILKVQNLQEQEMLQEALKVTRKLVARIKELEEEKSEHSEEND
D
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgctggagacggcgcagggaaagacaacggcagtcgccggcgtgaaccagacgctggcg
gcagtgattgcctgtatcgcggcagaaaaagggaaaaagacgctgctggtggcggacaac
gacctgaaggcagcccgggcagcggatgacgtgcgtcagctgacgggcgaaggctgttgc
ctgcccggcggtgagattgacctgacccgtgcggcgggaagcctggagagcaattggcgg
agactggaagcactggcggctgtgacggaaggcaaggtcaggatcctgtgtgccggagcg
gaagccatggcacagcggatgggccggccggagcctttcagggcactgagcctgacgctc
aagccgggagacgtgtttccgccggcggacctggccaggcggctgagccggatgggctat
gaccgcgtgggcatggtggaaggcaaaggccagttcgcgcagcgcggatccatcctggac
gtgtatcctccggcattggcacagggtctgcggattgagttctttgacgatgagattgac
ggaatccgggagtttgactgcatcagccagcggagcctgggagacgttccggaagccgta
ctgacgcctgcgtgcgaagtgctgctggaagaagacgaatatccggaagctgcccgccgg
atgcgggaagccatcaatgatcagccggatacggacatcgggaaggatttgctgtttgac
gacctgccgccgctgccggacgatgaagatgacgcggagctttttgataaaaagattgct
ccgaaggttcgggaaaagcagtataaggaacagaaggaactggaagctgaccggcggatg
gaacggcttcgccaggatgcggaaacgctggaacaggggctgcctttccggcggatgcgg
gcctggctgccggtgctgacggataagacggcatcggtatgcgactggtttgagccggat
ctggtgctgctgtgcgaaccggaccgcctgcggaaccggattgaggagcggctgcagggc
tttgcggaagacctgcagagcgcgattacccgccgggaggcggtcacagaccaggaaagc
ctgctgaaggactgggaaacggtgctgaaagaactgaaaccgtatcccaagggactgctg
acggagattctgctcggacttggcggcatcaagccggacaatacggtgacggtggaagca
accggcatccagggctatggcgggcagatgcgcgcgctgaagaacgatattgccctttgg
cgggagcatggatacaggatttacctgctttcaggcggaagcagccgcggtaagcggctg
gaggaaagcctgaaggagctggaagagaaaacagaattccgggaagaactcagcgcggca
aagccgggcgaagcggtgatcctgccgatcacgctcagcggaggcttcatcatccgaggc
ggggaaggctgccccggaacggcggtggtttccgacgcggatatctggggtgagggctac
cggcggagcaagagccggaagcgctccggtgaacggatttccacattcacggacctgaag
gtgggcgactatgtggtacatgaagaccacggcgtcggtatctaccagggcattacccgg
atccagagtgagggaagctggcacgactacctgctgattcactacggcggaaacgacaag
ctgtatgtgccggtggaacagctggaacgggtacagcgctatattggcaatccgaaccag
gcgccgaagctgaaccgcctgggcggaggagaatgggcccggcagaagggcaaggttaag
gaaggcctgaaagcgctggcctttgacctgaaggccctgtacgcggaacgctcccagaac
acgggacatgccttcggaccggatacggactggcagcgggagtttgaagatgaattcccg
tgggaactgaccccggaccaggcacagagcgtacaggaaatccgggaagacatggaaagc
gaccggaacatggaccggctgctgtgcggcgacgtgggctacggaaaaactgaagtcagc
ctgcgggcagccttcaaggcgatcgcggataacaagcaggtggccctgctggcgcctacc
acgatcctggtgcagcagcactacaacaccattgtgaagcggttccggcataccggggcg
cgggtggatttcctgagccggttccggactccggcggaacagaaggacgtgctggccaag
ctggccatgggcgacattgacctgattgtcggtacgcacaagctgctgggcaaggacgta
aagttcaaagacctgggcctgctcatcgtggacgaagagcagcgcttcggcgtggcccat
aaggaagttatcaagaacatgaagcggcaggtggacgtgctcaccctgagcgcgacgccg
attccgcggaccctgcatatgtccatgacgggcatccgggacatgagcgtgctggaaacc
ccgccggaagaacggatcccggtacagaccgtggtcacggagtattccgacgccctgatc
cgggacgctatcctgcgtgagctcggcaggggcggacaggtctatttcctgtataaccgg
gtgcggagcatcggcagcttctatgagcggctgcgggccctggtaccggaagcccgggtg
ggtgtggcccacgggcagatgaaggagcaccagctggaagacgtgatgctggacttctac
aacggcaattatgacgtgctgctgtgcacaaccattattgaaaacggcctggacgtgccg
aacgcaaataccctgattgtgtatgacgcggaacggttcggcctcagccagctttatcag
ctgcggggccgggtgggccggagcaaccggcaggcctatgcctacttcacggtgcgggcg
gaccatatgctgacggaaacggcccagcagcggctgacggctatccgggagtttacggag
ttcggcgccggtttccgtatcgcgatgcgggacctggaaatccgcggtgcgggcaatatc
cttggaccggaacagcacggtcatctggctacggtcggttatgatatgtactgtaagctg
atggaagaaaccctgaacgaggtacagggccggcagaccgcacgggagctggagacccgg
gtggatctgcgggtggacgccttcctgccttccgactatgtagcggaagaaaagcagcgg
atggaaatgtacaagcggattgcttccgtggtaacggacgaagaccgggcagacgtgacg
gacgaactgattgaccgctacggcgacctgccgccggctgccgagacactgcttgacgta
agccagctgcgggcactgtgcaaccggctgggcgtcagccaggtgactcgcggcaaggaa
ggcctgatcatgaaggtagacgagcggtatgtgccggatccggcatgcctgttgcaggca
atctctgagactgacggacggctgatcctgtccgccagggcaccggccaggatgatcctg
aaggtgcagaacctgcaggagcaggaaatgctccaggaggcgctgaaggtgacaaggaaa
ctggtggcgcggattaaagaactggaagaagaaaagagcgaacacagtgaagagaacgat
gactaa
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