Arcanobacterium haemolyticum: Arch_1517
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Entry
Arch_1517 CDS
T01242
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahe
Arcanobacterium haemolyticum
Pathway
ahe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Arch_1517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahe03400
]
Arch_1517
Enzymes [BR:
ahe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Arch_1517
DNA repair and recombination proteins [BR:
ahe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Arch_1517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADH93216
UniProt:
D7BKN6
LinkDB
All DBs
Position
complement(1659192..1662698)
Genome browser
AA seq
1168 aa
AA seq
DB search
MNLGSLLNVFTSNPEFAGLESEKECQIDVPRGAVAPLVAALTEIDQRRTNVIVTATGREA
DELATLLGSYIPHDTIAVLPAWETLPHERLSPRSDTVARRLRTLRRLAHPEEFPPLLVLI
VPVRSLLQPVAQGLGELTPVVIKIGDTIDIADVQERLVAHAYTRVDMVETRGEFAVRGGI
LDIFPPTEAHPMRIELFGDEVDDIRSFAVADQRSIEKCAEVYAPPCRELIFTDSVRSRAS
QAMETFPGAIDMLEKIANGIAVEGMESLMPILVPEMHPVLDYFPQQTRIIVVEPERVTAR
ADSLIETTDEFLAAAWSAAVSGGEVPLSVNKASFQTVSHIRKLAQERGYAWWSAAGFPSD
ESFHTDLAEPSSFGGNIEKAIDHIEAIVKQRWSVVIVVEGPGLGRRLAEQIEAADVPATF
VNIVPATLQAGIVYVTVAPMPTGFIHTGRRIAVFGAADLMSRKRAAVRSQSAMPKRRKNA
VDPLQLKPGDYVVHQRHGVAQFVKLAKRALGGRSGSQREYVVLEYASSKRGNPRDQLWVP
TDQLDQVTKYSGGDAPSLNKMGGADWAKTKAKARAAIKQIAKELIRLYAQRRATKGHAFG
PDTPWQRELEDAFAYIETPDQISTIDDVKRDMESLEPMDRLISGDVGYGKTEIAVRAAFK
AVQDGKQVAVLVPTTLLVQQHLETFTERYSGFPVTVAGLSRFQTAKEAEGVRKGAREGTI
DVVIGTHRLITGDVRFKDLGLVIIDEEQRFGVEHKEMLKQLYPAVDVLSMSATPIPRTLE
MAVTGIRQMSTLATPPEERHPILTYVGGHEPKQISAAIKRELLRDGQVFYIHNRTQSIHK
VAAEISELVPEARVGVAHGKMTEHQLEDVIQAFWDKEIDVLVCTTIVETGLDISNANTLI
VEDAHKLGLSQLHQLRGRVGRGRDRAYAYFLYPRDKAMTETAIERLRTIATHSELGAGIH
VAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMVSEAVAQLTGQDKRSEAEQLADMRIE
LPVEAYVPENWVTSERLRLEIYTKIAASTNDAQRQDIRNELVDRYGEIPKEVDRLFALAR
LREQARAAGIEEITAMGKNIRFAPVVLSDSRQARMRRLYPRAIAKAAIRTVMMPMPERGG
QVLGTAEALENEEILEFVSRVIDQLFIG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaggatctttactcaacgtttttacatctaacccggagtttgctggcctagag
tccgaaaaggaatgccagattgatgtgccacgtggtgctgttgctccgctggttgccgcg
ctcacggaaatcgatcagcgccgaaccaacgtgatagtcacggctacaggccgtgaagcc
gatgaattggccactctccttggctcgtatattccccacgatacgatcgcggtacttccc
gcatgggaaacccttccgcacgaacggttatctcctcgttcggataccgttgcgcgcagg
cttcgtacactccgccgccttgcacatccggaagaatttccaccgttactcgtgttaatc
gttcctgtgcggtctttattacaaccagttgctcaagggttgggagaactcacgcctgtt
gttatcaagattggcgatacgattgatattgctgatgtgcaagaacggttagtggcgcac
gcatatacccgtgtggatatggttgaaacacgtggtgaattcgcagttcgtggcggtatc
ttagacatcttcccgccaaccgaagcgcatcctatgcgtatcgaactgttcggtgatgaa
gtagatgatattcgttccttcgctgtagctgatcagcgatcgatcgaaaaatgtgcagaa
gtgtatgctccgccgtgccgcgaactgatctttactgatagcgttcgttcccgggcatcc
caggctatggaaaccttccctggagccatcgatatgctggaaaagattgccaacggaatc
gccgtggaaggcatggaatcactcatgccaatcttggttccagaaatgcatcccgtgctc
gattacttcccacaacaaacgcggattattgttgttgaaccagaacgtgttacggcacgt
gcagattcgcttattgaaactacggatgaattcttagcagccgcatggagtgcggctgtc
tctggtggcgaagttccgttgagcgtcaataaggcatcattccaaacggtatcgcatatt
cggaaactggcccaagaacgcggatatgcatggtggagcgcggcgggtttcccaagcgat
gaatcgttccatacagatcttgccgaaccatcaagcttcggcggaaacattgaaaaagcc
attgatcatatcgaagctattgttaagcaacgatggtccgtggttattgttgttgaaggt
cctggtttagggcgccgcctagcagaacaaattgaagcagcggacgtgccggcaacattc
gtgaatattgtgcctgctactttgcaagcagggattgtttatgtgactgtggctcctatg
cctactggcttcattcacactggccgccgcatcgcagtttttggcgctgctgatttgatg
agccgtaaacgtgcggctgtgcgcagccaatcagccatgccaaaacggcgtaagaacgcg
gttgatccactgcaactgaaaccgggtgactatgttgtccaccagcggcacggcgtggct
caattcgtgaaacttgccaaacgtgcactcggcggccgcagcggttcccagcgtgaatat
gtggtgttagagtatgcgtcgtctaaacgcggaaacccacgcgatcaactgtgggtgccc
actgatcagctcgatcaagtcactaaatattcaggtggcgatgcgccaagtttgaacaag
atgggcggcgctgattgggctaaaactaaggcgaaagcgcgcgctgcaatcaagcagatc
gcgaaagaactgatccgtttgtacgctcagcgtagggccacaaaaggccatgcttttggc
ccagataccccatggcagcgcgaactagaagatgcctttgcttacattgaaacgccagat
cagatctccacaattgacgatgtaaaacgcgatatggaatcgctagaaccgatggatcgc
ctgatctctggggatgtgggctacggaaaaacagaaattgctgtccgggctgcattcaaa
gcggtacaagatggcaagcaggtagcggttcttgtgcccaccaccttgcttgtgcaacag
catctggaaacattcactgaacgttacagcggattcccagttacggttgccgggctatcg
cgtttccaaaccgcgaaagaagctgaaggggtgcgtaaaggtgctcgtgaaggaacaatc
gatgttgtgattggcactcatcggctgatcacaggggatgtgcgattcaaggatcttggg
ctcgttattattgacgaagaacagcgcttcggcgtggaacataaagaaatgctcaagcaa
ctctatccggctgttgatgtgctgtcgatgtctgcaaccccaattccgcgaacgttggaa
atggcagttactggtatccgtcagatgtctacacttgccactccgccagaagaacgccat
ccgattttgacgtacgttggtggccacgaaccgaaacagatctctgctgctatcaagcgt
gaacttctgcgcgatggccaagtgttctacatccacaaccgcacgcagagtattcacaaa
gtggccgctgaaatttccgaactcgtgcctgaagcacgggttggggtggcacatggaaag
atgactgaacatcagttagaagatgttattcaggcgttttgggataaagaaattgatgtg
cttgtgtgcaccacgattgtggaaactggcctggatatttccaacgcgaacacgttgatt
gtagaagatgctcataagctcggcctttcccaactccatcagcttcgcgggcgcgttggc
cgcggccgggatcgtgcctatgcctatttcctctatccgcgtgataaggcaatgactgaa
acggcaatcgaacgcctgcgcactattgccacacactctgaactgggtgcaggtatccat
gtagcgatgaaagatttggaaattcgcggtgccggaaatctgttaggtggcgaacagtct
ggccatatcgctggagttggtttcgatctttacctgcggatggtctctgaagccgtagct
caattgactgggcaagataagcgcagtgaagcagaacaactggctgatatgcgaatcgaa
cttccagtagaagcctacgtgccagaaaactgggtaacatcggaacggttgcgtctggaa
atttacaccaagatcgcagcttcaaccaacgatgctcaacggcaagatattcgcaacgaa
ctggttgatcgatacggtgaaattccaaaggaagtggatcggctctttgccctcgctcgc
ctccgggaacaagcccgtgcagcaggaatcgaagaaatcactgccatggggaagaacatc
agattcgctccagtggtcctctctgactctaggcaggcgcgaatgcgccgcctgtatcca
cgcgcaattgccaaagctgcgattcgtactgtcatgatgccaatgccagaacgtggaggt
caagtgttgggcacagccgaagcgttagagaatgaagaaatcctcgaattcgtcagccga
gtgatcgatcaacttttcatcggttga
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integrated database retrieval system
