Arachis hypogaea (peanut): 112696636
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Entry
112696636 CDS
T07294
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112696636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahf03021
]
112696636
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112696636
Transcription machinery [BR:
ahf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112696636
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112696636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
DUF3973
Motif
Other DBs
NCBI-GeneID:
112696636
NCBI-ProteinID:
XP_025605246
LinkDB
All DBs
Position
Arahy.06:complement(60668929..60675627)
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AA seq
1030 aa
AA seq
DB search
MNMESTRRSFDRSREPGAKKPRLIDELDSSSNPISRPFSQPRQPPSSAVTPLTSATARFR
TNSDRDSESSDRYHPQPPPHQELVSQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIA
GTVCTNILEVPNEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYKQVDPPVHSSM
RHLFGTWKGYFPPQTLQMIEKELGFTPAVNGSASSSATLRSESQSQRPAHSIHVNPKYLE
RQRLQQSSRIKGVANDTTRAILNSNEDSERSSRVLGASRPWLDPRINMHVCRRIQRDAYN
NSVPEKSLAESYGAIKNSSGISSIGTTGSRVTELGHDKTWYKAGISVAENTSNQSNGFSL
KLGFSNREAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAA
SIANNMNTEPWMGGDDENLDGDQSQILHHDREISTARKQSFASGGHSSLPWQLQEQRSNE
KLNLRPGHSEKLLSALGCLPANTSSLVVRMPNQSSMPNATKDMSETMGQKQFDSMGTKPT
SVQSPLQQQSASLPVTKLHPHPTQNLLEQDNGKASKTSQFLGDLQRQYIRDQPAALPPNA
QVGRLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKPLHSKVSLASESSEQS
KSSLSAATVQTRFLNKSITNSFPGTSSSLVTKNLPSDLGVCPALSGRPSSATLISSVSAV
ASPSTLVPPDDDSSILDNISQANTGQKPKVSTKLPTSSNMSTVSAPTSTARKNNSLNPIA
NLLSSLVAKGLISTDSESSTKVPTEALVQLEARTESITASSSLPVPSVTGSTVLPVTSSK
VVEDDAKASLIVSQSTNTKIRNIIGFDFKPDIVREMHPTVIKGLLDDSQHHCRFCGIKLK
QEEQFNKHLEWHFAREREQHGLIRASRKWYENWFLSEPSDSVDDYCEETDRSPFDAMVPA
DESQCLCVLCGDLFEDVYCQERDEWMFKGAVYINNLDRNGEMESRNVGPIVHAKCLSENS
VAGGIKMEQD
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggagagcacgcgtagatcgttcgatagatcgagagagccgggcgccaagaag
ccccgattgatcgacgagctcgacagcagttccaaccccatttcccgaccgttttctcag
ccgcggcaaccgccgtcctctgcggttacaccgttgacttccgccaccgcgaggttccga
actaacagcgacagggactccgaaagcagcgacaggtaccacccgcaaccgccaccgcac
caggagcttgtatctcagtacaaggccgcgctagctgagctcactttcaactcgaagcca
ataattacgaacttgaccatcattgcaggagagaacctttctgctgcgaaggccattgct
ggcaccgtttgtaccaacattctagaggttccaaatgaacaaaagcttccatctctttat
ctcttggacagtattgttaagaatattgggcgggattatataaaatactttgctgccaga
ctacctgaggtattcatcaaggcatacaaacaggttgatccacctgtccattcaagtatg
aggcatctttttggaacttggaagggatactttcctccgcagacccttcagatgattgaa
aaggaacttggcttcacacctgcagtcaatggttcggcttcttcatctgctacactcaga
agtgaatcacagtcacaacgcccagctcatagcatccatgtgaatcctaagtatttagaa
cgacagcgtcttcagcagtccagcaggattaaaggagtagctaatgatacgactagagct
attttgaactcaaatgaggattcagagaggtcaagtagagttttgggtgcttcacgaccg
tggctagatcctaggattaacatgcatgtatgtaggcgtattcaaagagatgcatataac
aattctgttcctgagaagagtttagctgaatcctatggggccataaaaaatagttctggt
atttcaagtattggaacaactggcagtagggttactgagctgggacatgataaaacttgg
tataaagcaggaatcagcgtggcagagaacacgtctaatcaaagtaatggtttcagtttg
aagcttggtttttcgaatcgtgaagcaccaaagtcgatgaacttgggtgcacatcatcag
ccaacacaaaacttaactagcatacagagcagtgtagtgccaggtagctggaaaaattct
gaggaagaggaattcatgtgggatgaaatgaactctggaatgattggtgatggtgcagcc
agcattgccaacaacatgaatacagaaccatggatgggtggtgatgatgagaatttggat
ggagatcaatcccaaatcttgcaccatgatagagaaatatctactgctaggaaacaatca
tttgcatctggggggcattcatcattgccatggcaattgcaggagcagagatcgaatgaa
aagttgaatctgaggccaggtcactcggaaaaattgttgtcagctttaggttgcttacca
gctaatacaagttctttggttgtcaggatgccaaatcagtcttccatgccaaatgcaacc
aaagatatgtctgaaactatgggacaaaagcaatttgattccatgggaacaaaacccact
tctgtgcagtcacctttgcagcagcagtctgcatcattgcctgtaacaaagctccaccct
catccaacacaaaatttgttggagcaagacaatgggaaggcttctaaaacatcacaattt
ctgggagatctgcagagacaatacattagagatcaaccagctgcccttcctcccaatgct
caagttggtcgtttgcatagatctagagaaaaggatttgcatggtcctttatcttcagag
acttcttttctgccaaggcatcagcagcagccactggtctcttcccagactgaagttatt
gcaaaaactaagcctctccactctaaagtctctttggccagtgaaagttcagaacaatca
aaaagtagtttgtcagctgcaactgtgcagactagattcctcaacaaatcaattacaaat
agttttcctggtacaagtagtagtctagttacaaagaatcttccatctgacttaggggtt
tgcccagctctatcaggtagaccctcgtctgccacattaatttcttcggtatctgcagtt
gcatcaccgtcaacattagttcctccagatgacgattcttctattctggataacatatca
caagcaaatactggacagaaaccaaaggtctctacaaaattaccaacttcctctaacatg
agcactgtgtcagctccaacctcaaccgctagaaaaaacaattccttgaatcccattgca
aaccttttaagctcactggttgcaaaaggtttgatatctacagattcggagtcatcgact
aaggtaccaacagaggcattggttcaattggaagcccgtactgaaagcattactgccagt
agctcattgccagttccttcagttactggttccacagttctcccagtaacatcctctaaa
gttgtggaagatgatgcaaaagcctccctgatcgtaagtcaatcaaccaacaccaaaata
aggaatatcatcggctttgattttaagcctgatatagttcgagagatgcatcccactgta
atcaagggattattggatgatagtcagcatcattgcagattttgtggtattaagcttaaa
caggaagaacagttcaacaaacacttggagtggcattttgcacgagaaagagagcaacat
ggtctaattagagcatccagaaaatggtatgagaattggtttctgtctgagcctagtgat
tctgtagacgattattgcgaggaaacagacaggagtccatttgatgctatggttccagct
gatgaaagccagtgcttgtgtgtattgtgtggtgatctgtttgaagatgtgtactgtcaa
gagagggatgaatggatgttcaaaggtgctgtttacataaacaacttagatagaaatggt
gagatggaaagtagaaatgtggggccaattgttcatgctaaatgtttatctgagaactca
gtagctggcggcatcaagatggaacaggactga
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