Arachis hypogaea (peanut): 112747374
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Entry
112747374 CDS
T07294
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112747374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahf03021
]
112747374
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112747374
Transcription machinery [BR:
ahf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112747374
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112747374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
112747374
NCBI-ProteinID:
XP_025651139
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All DBs
Position
Arahy.15:complement(668261..675054)
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AA seq
747 aa
AA seq
DB search
MDEARSTFVWVLLGQFYCAQMANGITHKPSHSMLVGRFYALLPQRQGYLKAFTAEEIVRA
YGLLLSELTSNVNPIITDLTIIAGEQRKHAKGIADVICNRILEVPADKKLPSLYLLDSIV
KNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQGLFGTWSKIFPPSVLSNIEAQLQSS
PAVNNQQSFANHLGAYDFRGPILGAHVTKPQSLQQMEHSSSIMDNLGGDRLDSTGTVGNT
RGGGLNEWQQKRFSSDNWNIFQTSKTYNLNDEQRQSPRALIEAYGCHKSREIPSTKLLLV
EQPGRNGFGSKFPLASWQDTEEEEFDWKDVNPGLVDCSRNSSSMQSSVRFSKKRKLSNDL
SNPSQYPFTMGAAPPAVNAHGTRPSGLNTAFPLQKRPNVGHGPNKTQFIHDQLPNQPGPV
SSNLQNHGQTPQLQFLPPQIPSSTQISHGSSLQGHGASISTPISNPLPDMLGQSLYLHGG
ILPPLCSSLPTAPSQTMSHPHADASVTSQPPPAYLDLLSSLVNHGVISVTNPPTNPPAGL
DFIGTEFDPDILKVRHEGVISALYGDLPRQCRSCGLRFKRQDEHSRHMDWHVTRNRMSKS
RKQKGSQKWFASGSMWLSGAEASGKESIPRLLAAEETEEMKDEEELGVPAEEDQSRCALC
GEGFDEFYSHEMEEWMYRGATYLKAPMGTTLATLDRHQLGPIVHSKCRSDSDSTMPSTNR
EPTKRVVREKECGSTKHQFCAPLIRTY
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagctagatctaccttcgtttgggttcttcttggtcaattctattgcgcacaa
atggcgaatggtatcacgcacaagccttctcattccatgctcgtgggtcggttttacgcc
ttacttccacagcgccaaggctacctcaaggctttcactgccgaagaaattgttcgagct
tatgggctattgttgtcagaactcacctccaatgtgaaccccatcattaccgatctcact
atcattgccggcgagcagaggaaacacgccaagggcatcgccgatgtcatttgcaaccgg
attcttgaggtgcctgccgataaaaaacttccttctctctatcttctggacagtattgtg
aagaattttggccaggaatatgttaaacacttctctttacgtctacctcaagtttactgt
gaggcatacaggcaggttcagcccaatctgcattctgttctgcaaggtctctttggtacc
tggtcaaagatattccctccctctgtcctaagcaatattgaagctcaattgcaatcttca
ccagcagttaataatcaacaatcctttgctaatcaccttggggcatatgattttcgtgga
ccgattcttggggcacatgtcactaaaccacaatccttgcagcagatggaacactctagt
tcaatcatggataatcttggtggtgatcggttggattcaacgggaactgtaggtaataca
agaggaggaggattgaatgaatggcaacaaaagagattttctagtgataattggaacata
tttcaaacttccaagacttataatctcaatgatgaacaacgtcaaagtccaagagctctt
attgaggcatatggttgtcacaaaagccgtgaaattcctagtactaagcttttattggtg
gagcagcctggcagaaatggttttgggagcaagtttccattggcatcatggcaggacact
gaagaagaggagtttgattggaaagatgtgaatccaggattagtagactgtagtagaaac
agcagttctatgcaatcaagtgttagattctccaagaaaaggaagttatctaatgatcta
tctaatccttcacagtacccctttactatgggggctgctccccctgctgtcaatgctcat
ggcactcgtccttccggcttgaatacagcatttccattgcaaaaacgtcctaatgtaggt
catggcccaaataaaactcagtttatacatgaccaattgcctaatcaacctggaccagtt
tcctctaacctgcaaaatcatggacaaacacctcaactacagtttcttccacctcaaatt
ccatcttcaacacaaattagtcatgggagctctttgcaaggacatggtgcctcaataagt
acgcccatctcaaatccattacctgatatgctgggccaaagtttatatttacatggggga
atcttgccacctttatgttcaagcctcccaactgctccatcacaaacgatgtctcatccc
catgctgatgcttcagtgacaagtcaaccaccacctgcatatcttgatttgcttagttca
ctagtgaaccacggtgtgatctcggtaactaatccacccaccaatccacccgccggactg
gatttcattgggacggagttcgatccagatatcttgaaggttcgtcatgaaggtgtaatc
agtgccttatacggtgatcttcctagacaatgcaggagctgcggtctccgattcaaaagg
caagatgagcacagtagacatatggattggcacgtgactaggaaccgaatgtcaaaaagc
cggaagcagaaggggtctcaaaagtggtttgcaagtgggagcatgtggctgagtggtgca
gaggcttcgggaaaggaatcgattccaaggttgttggctgccgaggagacagaggaaatg
aaagatgaggaagagttaggcgttcctgctgaagaggatcagagtagatgtgcactgtgt
ggagagggctttgatgagttttacagccacgaaatggaggagtggatgtatagaggagcc
acataccttaaggcacccatgggaacaacattggccaccttggacagacatcaactagga
cccattgttcattccaaatgcagatctgactctgactctactatgccctcaaccaacagg
gaacctaccaagagagtagtaagagaaaaagaatgcgggtcgaccaaacatcagttttgt
gcacccttgattaggacttactaa
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