Arachis hypogaea (peanut): 112754396
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Entry
112754396 CDS
T07294
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112754396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahf03021
]
112754396
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112754396
Transcription machinery [BR:
ahf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112754396
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112754396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
112754396
NCBI-ProteinID:
XP_025657810
LinkDB
All DBs
Position
Arahy.16:83632670..83639079
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AA seq
1027 aa
AA seq
DB search
MNMESTRRSFDRSREPGAKKPRLIDELDSSSNPISRPFSQPRQPPSSAVTPLTSATARFR
TNSDRDSESSDRYHPQPPPHQELVSQYKAALAELTFNSKPIITNLTIIAGENLSAAKAIA
GIVCTNIVEVPNEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFIKAYKQVDPPVHSSM
RHLFGTWKGYIPPQTLQMIEKELGFMPAVNGSASSSATLGSESQSQRPAHSIHVNPKYLE
RQRLQQSSRIKGVANDTTRAILNSNEDSERPSRVLGASRPWLDPRINMHRIQRDAYNNSV
PEKSLAESYGGMKNSSGISSIGRTGSRVAELGHDKTWYKAGLSVAENTSNQSNGFSLKLG
FSNCEAPKSMNLGAHHQPTQNLTSIQSSVVPGSWKNSEEEEFMWDEMNSGMIGDGAASVA
NNLNTERWMGGDDENLDGDQSQILHHDREISTARKQSFASGGHSSLPWQLQEQRSNEKLN
LKPGHSEELLSALGCLPANTSSLVVRMANRSSMPNATKGMSETMGQKQFDSMGTKPTSAQ
SPLQQQSASLPVTKLHPHPTQNLLEQDYGKDSKTSQFLGDLQRQYIRDQPAALPPNAQVG
CLHRSREKDLHGPLSSETSFLPRHQQQPLVSSQTEVIAKTKKPLHSKVKASESSEQSKSS
LSAATVQTRFLNKSITNSFPGTSSSLVTKNLPSDLGVCPALSGRPSPATLISSVSAVASP
STLVPPDDDSSILDNISQANTGQKPKVSTKLPTSSNMSSVSAPTSTATKNNSLNPIANLL
SSLVAKGLISTDSESSIKVPTEALVQLETRTESITASSSLPVPSVTGSTVLPVTSSKVVE
DDAKASLIVSQSTNTKIRNIIGFDFKPDVIREMHPTVIKGLLDDSQHHCRFCGIKLKQEE
QFNKHLEWHFAREREQHGLITASRKWYENCFSSEPSDSVDDYCEETDRSPFDAIVPADDS
QCLCVLCGDLFEDVYCQERDEWMFEGAVYINNLDRNGEMENRNVGPIVHAKCLSENSVAG
STKMEQD
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggagagcacgcgtagatcgttcgatagatcgagagagccgggcgccaagaag
ccccgattgatcgacgagctcgacagcagttccaaccccatttcccgaccgttttctcag
ccgcggcaaccgccgtcctctgcggttacaccgttgacttccgccaccgcgaggttccga
actaacagcgacagggactccgaaagtagcgacaggtaccacccgcaaccgccaccgcac
caggagcttgtatctcagtacaaggccgcgctagctgagctcactttcaactcgaagcca
ataattacgaacttgaccatcattgcaggagagaacctttctgctgcgaaggccattgct
ggcatcgtttgtaccaacattgtagaggttccaaatgagcaaaagcttccatctctttat
ctcttggacagtattgttaagaatattgggcgggattatataaaatactttgctgccaga
ctacctgaggtattcatcaaggcatacaaacaggttgatccacctgtccattcaagtatg
aggcatctttttggaacttggaagggatacattcctccgcagacccttcagatgattgaa
aaggaacttggcttcatgcctgcagtcaatggttcggcttcttcatctgctacactcgga
agtgaatcacagtcacaacgcccagctcatagcatccatgtgaatcccaagtatttagaa
cggcagcgtcttcagcaatccagcaggattaaaggagtagctaatgatacgactagagct
attttgaactcaaatgaggattcagagaggccaagtagagttttgggtgcttcacgaccg
tggctcgatcctaggattaacatgcatcgtattcaaagagatgcatataacaattctgtt
cctgagaagagtttagctgaatcctatgggggcatgaaaaatagttctggtatttcaagt
attggaagaactggcagtagggttgctgagttgggacatgataaaacttggtataaagca
ggactcagcgtggcagagaacacatctaatcaaagtaatggtttcagtttgaagcttggt
ttttcgaattgtgaagcaccaaagtcgatgaacttgggtgcacatcatcagccaacacaa
aacttaactagcatacagagcagtgtagtgccaggtagctggaaaaattctgaggaagag
gaattcatgtgggatgaaatgaactctggaatgattggtgatggtgccgccagcgttgcc
aacaacttgaatacagaacgatggatgggtggtgatgatgagaatttggatggagatcaa
tcccaaatcttgcaccatgatagagaaatatctactgctaggaaacaatcatttgcatct
ggggggcattcatcattgccatggcaattgcaggagcagagatcgaatgaaaagttgaat
ctgaagccaggtcactcggaagaattgttgtcagctttaggttgcttaccagctaataca
agttctttggttgtcaggatggcaaatcggtcttccatgccaaatgcaaccaaaggtatg
tctgaaactatgggacaaaagcaatttgattccatgggaacaaaacccacttctgcgcag
tcacctttgcagcagcagtctgcatcattgcctgtaacaaagctccaccctcatccaaca
caaaatttgttggagcaagactatgggaaggattctaaaacatcacagtttctgggagat
ctgcagagacaatacattagagatcaaccagctgcccttcctcccaatgctcaagttggt
tgtttgcatagatctagagaaaaggatttgcatggtcctttatcttcagagacttctttt
ctgccaaggcatcagcagcagccactggtctcttcccagactgaagttattgcaaaaact
aagaagcctctccactctaaagtcaaggccagtgaaagttcagaacaatcaaaaagtagt
ttgtcagctgcaactgtgcagactagattcctcaacaaatcaattacaaatagttttcct
ggtacaagtagtagtctagttacaaagaatcttccatctgacttaggggtttgcccagct
ctatcaggtagaccttcgcctgccacattaatttcttcggtatctgcagttgcatcaccg
tcaacattagttcctccagatgacgattcttctattctggataacatatcacaagcaaat
actggacagaaaccaaaggtctctacaaaattaccaacttcctctaacatgagcagtgtg
tcagctccaacctcaactgctacaaaaaacaattccttgaatcccattgcaaacctttta
agctcactggttgcaaaaggtttgatatctacagattcggagtcatcgattaaggtacca
acagaggcattggttcaattggaaacgcgtactgaaagcattactgccagtagctcattg
ccagttccttcagttactggttccacagttctcccagtaacatcctctaaagttgtggaa
gatgatgcaaaagcctccctgatcgtaagtcaatcaaccaacaccaaaataaggaatatc
atcggctttgattttaagcctgatgtaatccgagagatgcatcccactgtaatcaaggga
ttattggatgatagtcaacatcattgcagattttgtggtattaagcttaaacaggaagaa
cagttcaacaaacacttggagtggcattttgcacgagaaagagagcaacatggtctaatt
acagcatccagaaaatggtatgagaattgtttttcgtctgagcctagtgattctgtagac
gattattgtgaggaaacagacaggagtccatttgatgctatcgttccagctgatgacagc
cagtgcttgtgtgtattgtgtggtgatctgtttgaagatgtgtactgtcaagagagggat
gaatggatgttcgaaggtgctgtttacataaacaacttagatagaaacggtgagatggaa
aatagaaatgtggggccgattgttcatgctaaatgtttatctgagaactcagtagctggc
agcaccaagatggaacaggactga
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