Arachis hypogaea (peanut): 112775172
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Entry
112775172 CDS
T07294
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ahf
Arachis hypogaea (peanut)
Pathway
ahf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ahf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112775172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ahf03021
]
112775172
03019 Messenger RNA biogenesis [BR:
ahf03019
]
112775172
Transcription machinery [BR:
ahf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112775172
Messenger RNA biogenesis [BR:
ahf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112775172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
zf_UBZ
VHS
Motif
Other DBs
NCBI-GeneID:
112775172
NCBI-ProteinID:
XP_025674448
LinkDB
All DBs
Position
Arahy.19:complement(156786455..156792683)
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AA seq
972 aa
AA seq
DB search
MYSENLIVSAENPRPFAFQQHLSSSSSTTTSANAKPMSNEIAQKPPPSILVGRFKAMLKQ
RDDELRATAGHVPPPSTEEIVQLYEMLLSELTCNLKAIINDLTFIAEQQREHARGIADAI
CARILEVPAEQKLPSLYLLDSIVKNFGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHL
FGTWSKVFPPSVLRKIEAELQLSQVVNNSQSSNMNPLRASESPRPSHGIHVNPKYLRQLE
RSTVDSVGGEKFDIAGKASNTNFGIVANKTNQFVSSRLGISSSPSRIGLDRPLSVADEYA
VDSSSGRMVERESPHNYGVPRVVGREEELGEWQRKQYPGDVRNRFQTPLTYSLSNGHPRQ
SPRALIDAYGSDKSQETSSTKPLILDRLDRNGIDNKVTSWQNTEEEEFDWEDMSPTLVDH
SRNNGFLQSTAFSRDKPVAVAANAILSEQDTRKGWSGGSQLPPVDDSSVIAADAFPHSVY
GRVSMGQVSGFQNQINQSLGSRPPHDAWKVSQSQTMLNIRGRGRTLLMPPIDNNPNNDVN
PYGIRPAVSRMVSGIASNVEPRPPVLPGSFEIRPSVTVHGTRPPTLNPIFPPQKHVRSQF
DAINTSNPIMNHGPNKSLFMPEQPGLDIVENRDASKGKIHQLPNQLAGLLPSNLQNLGQT
PQHFFPSRDPSSSQFGHGNSLQGHGPSLSAAMSNPLPITQFPLPVQGIANNSLQLQGGVH
PPLPPGRPPAPSQMIPHPNAGPYVSNQQPAVAYTNLISSLMSQGVISLANQPSGQDSVGT
EFNPDILKIRYESAISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKSRKQKP
SRKWFVSDRMWLSGAEALGTESVPGFLPTETVEEKKDDEELAVPAEEDQNTCALCGEPFD
EFYSDEMEEWMYRGAVYLNAPTGATVGMDRSQLGPIIHAKCRSDTNTSPSEDFGLDEGGA
NEEGSQRKRMRS
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtactctgaaaatctgatagtgtccgctgaaaaccctagacccttcgcgtttcagcaa
catctatcttcttcttcgtctactactacttcggccaacgcgaaacccatgagcaatgag
atcgcacagaagcctcccccttccattctcgttggcaggttcaaggctatgctcaagcag
cgcgacgacgagctcagagccaccgccggtcacgtgccgcctccgtctacggaagaaatc
gttcagctgtacgagatgctgctgtcggagctcacgtgcaatctgaaggccattatcaac
gatctcaccttcatcgctgagcagcagagggagcatgccaggggcatcgccgacgctatc
tgcgctcggattctcgaggtgcctgcagagcaaaagcttccttcactctatcttttggac
agtatagtgaagaactttggacaggaatatgttagatactttgcattacgcctgcccgaa
gttttctgtgaggcatacaggcaggttcagcctcatttgcaccctgctatgcgccatctc
tttggcacctggtcaaaagtctttccaccgtctgtcctacgcaagattgaagctgagttg
caactttctcaagtagttaataatagtcaatcgtccaacatgaatcccctcagagcatct
gaatctcctagaccaagtcatggcatacatgtaaatccaaagtacctgcggcagttggag
cgctcaactgtggatagtgttggtggtgaaaagtttgacatagcaggaaaggctagtaat
acaaattttggcattgtagctaataagacgaatcaatttgtatctagcagacttggaata
tcctcttctccttcaagaattggtctagataggcctttgtcagtagcagatgagtatgca
gttgacagttcttctggaaggatggttgagagagagtctcctcataattatggagtacca
agagtagtaggtagagaggaagaattgggtgaatggcagcgaaagcagtaccctggtgat
gttcgaaatcgatttcaaactcctttgacatacagccttagtaatggacatccgcgtcaa
agtccaagagctttaattgatgcgtatggcagtgacaaaagccaagaaacttcaagcacc
aagcctcttatacttgatcggctagatagaaatggtatcgacaacaaagtgacatcatgg
cagaatactgaagaggaggagtttgattgggaagatatgagtccaacattagtagaccat
agtaggaataatggcttcttgcaatcaactgctttttccagggataagcctgttgcagta
gcagctaatgcaattttgtcagagcaagatacaaggaagggttggtctggtgggtctcag
cttcctccagtagatgattcttctgtcatagcagcagatgcatttccccattcagtttat
ggtcgtgtatccatggggcaggtatctggtttccaaaatcaaataaatcagagtctgggt
tcccgtccacctcatgatgcttggaaggtttctcaatcacaaaccatgcttaatattagg
ggccgaggaagaactcttttgatgcctcctattgataacaatcccaataatgatgtaaac
ccctatgggattcgacctgcagtgtcaaggatggtttctggtattgcctctaacgtagag
cctcgtccaccagttttgcctggatcttttgaaataagaccttctgtaactgtgcatggc
actcgtcctcccaccttaaatccaatatttccaccgcaaaaacatgttagaagtcaattt
gatgcaataaataccagtaatcccattatgaatcatggcccaaataaatctctgttcatg
cctgaacagccagggctggacattgttgaaaacagggatgccagtaaaggaaagatacat
cagttgcctaatcagctggctggattgcttccatccaacctgcaaaaccttggacaaaca
ccacaacattttttcccatctcgggatccatcatcctcacaatttggtcatggaaactct
ctgcaagggcatggtccttctttaagtgcagctatgtcaaatccattacctattacacag
tttcctttaccagtccaaggtattgcaaataattccttacaattacaggggggagtccat
ccacctttacctccaggtcgccctcctgctccttctcaaatgataccacatccaaatgct
ggtccatatgtatcaaaccaacagccggctgttgcatatactaatttaattagttcgctt
atgtcccaaggcgtaatctcattggctaatcaaccctctggacaggattctgttggaact
gagtttaatccagatattctgaagattcgttatgagtctgcaatcagtgccttgtatgga
gatctccctagacaatgcacgacttgtggactaagattcaaatgccaagaggagcacagt
agtcatatggattggcatgtaacaaagaacaggatgtccaaaagtcgcaaacagaagcct
tctcgtaagtggtttgtgagtgacaggatgtggcttagtggtgcggaggcactgggaaca
gaatcggttcctggttttctgccaaccgagaccgtagaagaaaaaaaagatgatgaagag
ttggcagtgccagctgaagaggaccagaatacatgtgcattatgtggtgagcctttcgat
gagttttacagtgacgaaatggaggaatggatgtatagaggagctgtatacctcaatgca
cccaccggagcaacagtgggcatggacaggtcgcagttaggtcccattattcatgccaaa
tgcagatcagacactaatacgtccccctctgaagatttcgggttggatgaagggggtgcc
aatgaagagggcagccaaagaaaacgaatgcggagttga
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