Aeromonas hydrophila AL06-06: RY45_13720
Help
Entry
RY45_13720 CDS
T03748
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ahh
Aeromonas hydrophila AL06-06
Pathway
ahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RY45_13720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ahh03019
]
RY45_13720
03009 Ribosome biogenesis [BR:
ahh03009
]
RY45_13720
Enzymes [BR:
ahh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RY45_13720
Messenger RNA biogenesis [BR:
ahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RY45_13720
Ribosome biogenesis [BR:
ahh03009
]
Prokaryotic type
rRNA helicases
RY45_13720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
AJQ55083
LinkDB
All DBs
Position
complement(3041613..3043508)
Genome browser
AA seq
631 aa
AA seq
DB search
MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA
AFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQ
TRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCP
AGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTR
LLEVEPYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDI
LIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLR
AIEHATRQAIEPMKMPSTEDINQHRLAKFKERIRETMMGEELEIYVNLVNELIEEDSADP
LELAAALAKLVQGDQPLLLDDSIPDPVFNAGNDRGGFERRDFNDRGGRDFADRGDRPARR
MPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGNIDIADDFS
TVDLPKGMSAEVLEVIKKARVCQRPLQISRYTEVPAGSNTAPRPPRGDRPFRGDRPFNKD
RRPQGDRPFNKDRREGGFDKGRKFGGKRRDS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccgaacaactgcccctttttagtgagcttggactggccgcgcctgtactg
aaagcgctgcaggacgtgggctatgagcgcccgtcccccatccaggccgcagcaattccc
cacctgatggcgggccacgatctgctggggcaggcgcaaaccggtacagggaagaccgct
gcttttgccttgcctctgttgtctcgtctggaagctggtaaccgcaacacccagatcctg
gtgctggcaccgactcgtgaactggccctgcaggtggctgaagcgtgccaacgctatgcc
caccacatgcctgatttccacgtgctgcccatctacggcggcgcctcctacgaaacccag
acccgcgccctgcgccgtggtgctcaggttgtcgtgggtaccccgggccgcgtgatggac
ctgatccgtcgcaagaacctggacctctccggcctgaaagccctggtgctggacgaagcg
gacgagatgctgcgcatgggcttcatcgacgacgtggactggatcatggaacagtgcccg
gccggtcgccaggttgccctgttctccgccaccatgccggagcagatccgccgtgtggcc
cagaagcacctgaagcagcccaaagagatcaagatcgcctccaagactgcgaccgccacc
accattcgccagcgttactggcaggtgaccggtctgcacaagctggacgccatgacccgt
ctgctggaagtcgagccctacgaagctctgctggtgttcgtacgcaccaagaacgccgcc
gaagaactggctggcaagctggctgctcgtggtcacgcctgtgaagcgctgcacggtgac
atcccgcagaagctgcgtgagcgtaccgtcgacaagctgcgccaaggccagctggacatc
ctgatcgccaccgacgtggtcgcccgtggtctggacgttgagcgcatcacccacgtggtg
aactacgacatcccctacgacaccgaatcctacgttcaccgtatcggccgtaccggtcgt
gccggtcgcaagggtgaagccatcctgttcgtggcaccgcgcgagcgtcgtatgctgcgc
gccatcgagcacgcaacccgtcaggccatcgagccgatgaagatgccgagcaccgaggac
atcaaccagcaccgtctggccaagttcaaggagcgcatccgcgaaaccatgatgggcgaa
gagctcgagatctacgtgaacctggtgaacgagctgatcgaagaagactctgccgatccg
ctggagctggctgccgcactggccaagctggtacagggtgaccaaccgctgctgctggat
gactccattccggatccggtgttcaacgccggcaacgatcgcggtggtttcgagcgtcgt
gacttcaacgaccgtggtggccgtgatttcgccgaccgtggcgatcgcccggctcgtcgc
atgccgtccctggagccgcgtccgctcaaagacaacccggacgtggaaatggagcgctac
cgcgtcgatgtgggtgctcatcacggcgtcaagccgggccagatcgtgggtgccatcgcc
aacgaagcgaacatcgagagccgtttcatcggcaacatcgacatcgccgatgacttctcc
accgtcgatctgcccaagggcatgagcgccgaagtgctggaagtgatcaagaaggcccgt
gtctgccagcgtccgctgcagatcagccgctacaccgaagtgccggccggcagcaacact
gctccccgtccgccccgtggtgatcgtccgttccgtggcgaccgtcctttcaacaaggat
cgccgtccgcagggtgaccgtcccttcaacaaggatcgccgtgaaggcggtttcgacaag
ggtcgcaaattcggtggcaagcgccgcgacagctaa
DBGET
integrated database retrieval system
