Acholeplasma hippikon: NCTC10172_01064
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Entry
NCTC10172_01064 CDS
T06645
Symbol
uvrB_1
Name
(GenBank) excinuclease ABC subunit B
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahk
Acholeplasma hippikon
Pathway
ahk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10172_01064 (uvrB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahk03400
]
NCTC10172_01064 (uvrB_1)
Enzymes [BR:
ahk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10172_01064 (uvrB_1)
DNA repair and recombination proteins [BR:
ahk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10172_01064 (uvrB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UB2H
RecG_dom3_C
Glyco_hydro_115
Glyco_tran_WecG
DUF2661
Motif
Other DBs
NCBI-ProteinID:
VEU83017
UniProt:
A0A449BL08
LinkDB
All DBs
Position
1:complement(1060394..1063825)
Genome browser
AA seq
1143 aa
AA seq
DB search
MYEKLLKLYNKTNQIKASQSDFKNVNHAYVQFLITLKYYQNNKNIFVVLPNLYDAQKYYD
KLSNILGDECVLFYPSDQMLTSMMALGSPEFKNERLFTLRKLLKNEQKYVVVTTQEGILK
RQLKPQDYENSVMTLYKNGSYDFQSLIKRLVYDGYQYNFTVERPGEFSVRGSIIDIFTHD
HKDPFRIDFFGDEIESIKTFDVLTQKSIESVDKIDLAPLHELFYTDKQKEVALKQFESFF
ENIDLSEKEINKYNTDFENLKNRKRMDSLSLYTSFFNSDETTILDFGNRNEIILVDKYKM
LINEESNQQDLKTYSETMFGDTFTKLPFRLNLDYILNKDHLSFELYYAADVITEDLKVFD
VEGFQGFLEPFLMFLNEYKAFTVICAMNGKVNYEKLKEFLSSHKVNFNDNDIKPGELNIM
HSGLPGSFLDTQNKVVVLTDESLFTSKQTGRIRYRSVINQAIKIRDASELKEGDYVVHYD
FGIGQYLGLKTMSLSGEKRDYLHIIYENNEALYVPTDQIELVLKYRRGDDLPPKLSKLSG
KQWGKTKAAVRKKIKDLSDRLLKLYAMRKEAKGFAFSRDNEMMEQFENDFNYEETKDQKL
AIEAVKKDMENERPMDRLIAGDVGFGKTEVALRAAFKATLDAKQVAYLVPTTVLARQHYY
SFKERFEKYGGNVALLSRYVSKKEQNEILDKLAKGYIDVVIGTHRLLSDDVKFKDLGLFI
IDEEQRFGVEHKEKIKEMKVNVDTLTLSATPIPRTLQMAMYGLKDLSMIETPPMNRYPVQ
TYVVERQDVIIKDAIDRELARGGQVFYLYNRVETIEAIMAKIQKLVPNARIATAHGKMSK
DKLEEVLQAFIEKEFDVLVSTTIIETGVDIPNTNTLIIHDADKLGLSQLYQLRGRVGRSD
KIAYAYLMFDAYKNINDEAKKRLSVIEDFTDLGSGFKIALRDLAIRGAGDILGDEQSGFI
DSVGMEMYMKLLDEVMNGIMEDPVKSQVPDQVFASRHIPKEYIDNDPVRIEIHKRIAALN
SLKDLEDLKLELEDRFGQIDLEVLIYMHEKLFKKLSSKVGIEKTVRESDSVRMIFSLDQS
EKVDGIKLLYAATNSKTKVSLADKRGHVEVNMITRGHKEHWLYLACELLESYLKTDINQS
IIS
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaaaaactattaaaattatataataagacaaaccaaattaaagcctcacaaagc
gattttaagaatgttaaccatgcttacgttcaatttttaatcacattaaaatattatcaa
aataataaaaatatctttgtcgttcttcctaatttatacgacgctcaaaaatactatgat
aagctaagcaatatcttaggtgatgagtgtgttttattctatccaagtgaccaaatgtta
acttcaatgatggcactaggctcaccagaatttaaaaacgaaagattattcaccttaaga
aaattattaaaaaacgaacaaaagtatgttgttgttacaacacaagagggtattttaaaa
cgtcaacttaaaccacaagattatgaaaatagtgtaatgactttatataaaaatggttca
tatgattttcaaagtttaatcaaacgcttagtttatgatggctatcaatataactttact
gttgaacgaccaggtgaattcagtgtgagaggatcaattattgatatcttcacacatgat
cataaagacccattccgtatcgatttctttggggacgagattgaatcaattaaaacattt
gatgtcctcacgcaaaaaagcattgaatctgtcgataaaattgatttagcaccacttcat
gaattattctatacagataaacaaaaagaagtagcattaaaacaatttgagtcgtttttt
gaaaacattgatttatcagaaaaagaaataaataagtacaatactgattttgagaatcta
aaaaacagaaaaagaatggacagtttaagtttatatacttcattctttaattcagatgaa
acaactatccttgactttggaaatcgtaatgaaattattttagttgataaatataagatg
ttaattaatgaagaatctaatcaacaagacttaaaaacttatagcgaaacgatgtttggt
gatacattcacaaaattaccatttagattaaatttagattacatattaaataaagatcat
ttatcatttgaattatattatgcagcagatgtaataacggaggatttaaaggtattcgat
gttgagggattccaaggattcttagagccgttcttaatgtttttaaatgagtataaagca
ttcactgttatttgtgcaatgaatggtaaagtaaattatgagaaactaaaagaattctta
agttcacataaagtgaattttaatgataatgatattaaacctggtgaactaaatattatg
cattcaggattaccagggtcattcttagatacacaaaataaggttgttgttttaactgat
gaatctttatttacaagcaaacaaacaggtagaattagatatcgctcagtaattaaccaa
gcaattaagattcgtgatgcatctgaacttaaagaaggagattatgttgttcactatgat
tttggtattggccaatatttaggattaaaaaccatgtctttatcaggtgaaaaacgagat
taccttcatattatttatgaaaacaatgaggcactgtatgtaccaaccgatcaaattgaa
cttgttttaaaatatcgtcgcggtgatgatttaccaccaaagttatcaaaattaagtggt
aaacaatggggtaaaacaaaagcagctgttagaaagaaaattaaagatttatcagataga
ctacttaagctatatgcaatgcgaaaggaagccaaagggtttgcatttagtcgagataat
gagatgatggaacagtttgaaaatgattttaattatgaagaaacaaaagatcaaaagtta
gcaattgaagctgttaaaaaagatatggaaaacgaacgtccaatggatagactaatcgcc
ggagatgtcgggtttggtaaaactgaagttgccctaagagcggcatttaaggccacttta
gatgcaaaacaagttgcatatttggtacctacaacagtacttgcacgtcaacactattat
agttttaaagaacgctttgaaaagtatggcggtaatgttgccttactatcgcgctatgtt
tctaaaaaagaacaaaatgaaattttagataaacttgctaaagggtatatagatgttgtt
attgggacacatcgccttttaagtgatgatgttaagtttaaggatttaggcttatttatt
attgatgaagagcaacgatttggtgtagaacacaaagaaaagattaaagaaatgaaggtg
aatgttgatacactaactttatctgcaacaccaattccaagaacacttcaaatggcaatg
tatgggttaaaagacttatctatgattgaaacccctccaatgaatagatatccggttcag
acatatgtagttgagcgacaagatgtcattattaaagatgctatagatcgtgaactagca
cgtggtggtcaagttttctacctatataatcgagttgaaacaattgaagcaattatggct
aaaattcaaaaattagttcctaatgctagaattgcaaccgcacatggtaagatgagcaaa
gataaactagaggaagttttacaagcattcatagaaaaagaatttgatgttttagtatca
acaacaattatcgaaacaggtgttgatataccaaatacgaatacattaattatccatgat
gcggataaactcggtttaagccaactgtatcaattaaggggtagagttggtcgaagtgat
aaaattgcttatgcatacttgatgtttgatgcatataagaatatcaatgatgaggcgaaa
aaacgattaagcgtcattgaagacttcacagatttaggcagtggatttaaaattgcactt
cgtgatttagcaattcgtggtgcaggggatatcttaggagatgagcaatctggattcatt
gattcggtaggtatggaaatgtacatgaagttattggatgaggtaatgaatggtatcatg
gaagatccagtaaaatcacaagtgccagatcaagtgtttgcatcccgtcatattcctaaa
gaatatattgataatgatccagtacgtattgaaatacataaacgtattgcagcattaaat
tcgttaaaagacttagaagatttaaaactagaattagaagaccgcttcggtcaaattgat
ttagaagtcttaatttatatgcatgaaaaattatttaagaagttatcaagtaaagttggt
attgaaaagacagtaagagaatcagattcagttcgaatgattttctcattagatcaaagt
gaaaaagttgatggtatcaaattactgtatgcagcgactaacagcaagacaaaagtatct
ctagctgataagcgaggacatgttgaggttaacatgattaccagaggacataaagaacat
tggttatatttagcgtgtgaactgttagagtcttacttaaaaacagatattaatcaatca
atcatttcttaa
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integrated database retrieval system
