Acinetobacter haemolyticus: AHTJS_06650
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Entry
AHTJS_06650 CDS
T04618
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ahl
Acinetobacter haemolyticus
Pathway
ahl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ahl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AHTJS_06650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ahl03400
]
AHTJS_06650
Enzymes [BR:
ahl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AHTJS_06650
DNA repair and recombination proteins [BR:
ahl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AHTJS_06650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APR70088
UniProt:
A0A1L6KLW2
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All DBs
Position
1345023..1348484
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWIGSLLGSSAALLFKEIATQSSNLYVIVARNNQHLAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGILLISASTLAQRVAPY
SWVVGEHFDIKVGQKLDLETQKKQLVQAGYRLVDTVYDHGEFAVRGSIMDIFASGQEQPI
RIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRSTFRDRYAESFPTANPK
KNPIYQDVLEGIATPGLEFYLPLFFDKKVMEAQSMFTTYLPKNCIVITNNEIEDELINFW
KEVVRRYEDRRHNIDQPILPPEDLFLMPNHVLQALNQLPRIIASPDVLDLKSGVLNLASE
QPPKLAVDPKKEQPFQAVKDYIDQINFPVLLVAESAGRRETLKDALRSVLGEIQTVESFA
QFQNDKLKVAITSAPLDRGLLLTDQLSVVSENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDHIAYMQFAS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQ
ENIQFNNLGLMIVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDSIKEAILRELLRGGQVYFLHNEVETIERAAENIRHLVPE
ARVAVAHGQMRERELEQVMQQFYHKDYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDE
YLGDVHQRLLFYKRISNTDSQEKLDNIRMELIDRFGIPPQPVKQLFSVHQIRLRAEQLGI
TKIDINSNGGYIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVTVQLAEYDKRIQFI
VDLLNKLLNELNV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagcaagaaatttctcaattaaatctacaacaactcaaagcaggcgaaaagcgt
tggattggctcattactgggatcgtcggcagcactattatttaaagaaattgcgacccaa
agttcaaatctatacgtcattgtggcaaggaataatcagcatttagctcaactggaaagt
gagcttgagttttatggtattaaacctacaattttccccgattgggaaatcttgccttat
gaccgtttgtctccacatcaggatattgtctcagagcgcttggctattttgtccaatatg
ccgcagaaaggtattttgttgatttccgcaagtactttagcccaacgtgttgcaccttat
tcatgggtggttggtgagcactttgatattaaagttggacaaaagcttgatttagaaaca
cagaaaaaacagctcgtacaagcagggtaccgtttggttgataccgtttacgatcatggt
gagtttgctgttcgcggtagcatcatggatatttttgcttcgggacaggaacaaccgatt
cgtatagatttattcgatgatgaaattgaaagcctaaaattctttgatccagaaacacaa
cgtacgacggagtctttgaaaaactttactgttttacctgccaaagagtttccactcaaa
gaaggccgttcaacttttagagatcgctatgctgagagttttccaacagcaaatccaaag
aaaaatcccatttatcaagatgtcctcgaaggaattgcaaccccaggattagaattctat
ttgcctttgtttttcgataagaaggtgatggaagcacaaagtatgttcacaacatactta
ccaaaaaattgcattgtcattacaaataatgagattgaagatgagctgatcaatttttgg
aaagaagttgtacgccgttatgaagaccgtcgtcacaacattgatcaaccgatcctacct
cccgaagatttatttttaatgcctaatcatgtactacaagcattaaatcaattacctcgt
attatcgcttcacctgatgttttagatttaaaatctggggtgttaaatcttgcttccgag
caaccacctaaacttgcagttgatcccaaaaaagaacaaccgtttcaggcggtcaaagac
tatatcgatcaaatcaatttccctgttttgttggtggctgaaagtgcaggccgtagagaa
actttaaaagatgctttgcgatcagttctaggtgaaatccaaacggtagaaagttttgct
cagttccaaaacgataaactcaaagttgcgattactagtgctcctttagatcgtggtttg
ctcctaacagatcagttatctgtcgtttctgaaaatcagttgtatgaacatcgggtagta
caacgtcgccgtaaacgtcagcaagaagtttctgaagagtttttgattcgcagtttaacc
gaactgagcattggtgcacctgtggttcacattgatcatggtgtagggcgctatgcagga
ttaatcactttagaaattgatgatcaagaccatgagtttttacaacttgattatgctgat
gcggctaaggtttatgtacccgtcactaacttgcatttaattagtcgttacagtggtggt
gatcctgatcttgcaccattgcacaaattaggaacggatgcgtggagtaaggcgaagcgt
aaagccttagaacagatccacgatgtggctgctgaattattacatatccaagcgcgtcgt
cagtccaaacctggatttgcttttgaacttgatcatattgcatatatgcaatttgccagt
ggttttgcttatgaggaaactttggatcaggcaaatgcgatcgaagcaacattgcatgat
atgcaacttgccaaaccgatggatcgtttagtttgtggtgatgtgggctttggtaaaaca
gaagttgcgatgcgagcagcatttgtggcggtacaaaatgggaaacaagtcgccgtatta
gtgccaacgacattacttgcacagcaacattatgagtcatttaaagatcgctttgctgat
actgcggtacgaatcgaggtactttcacggttcggtagcaataaaacgcatttaaaaatt
atagaagatttggcggatggcaaagtagatattgtggtgggtacgcacaaaattctacaa
gagaatattcaatttaataatctaggcctcatgattgtcgatgaggaacaccgttttggt
gttcgtgacaaagagcggattaaggcattgcgtgcagatgttgatatgctgaccttaaca
gcaacacctattccacgtaccttgaatatggctttctctggtatgcgtgatttatcgatt
attgcaacaccacctgcacgccgcttagcagtcaaaacctttgtgcaagaacacacggat
gattcaatcaaagaggccatactgcgtgagctgttacgtggaggtcaagtttatttccta
cataatgaagtcgagacgattgagcgtgccgcagaaaatatccgtcatctagttcccgaa
gcacgagtggcagttgcgcatggacaaatgcgtgaacgtgagcttgaacaagtgatgcag
cagttctatcacaaagactacaatgtattggtgtgctcaacgattattgaaacagggatc
gatgtcccaaatgccaatacgattatcatcgaacgcgcagataagttgggacttgcacaa
ttacaccaattacgcggtcgtgtaggtcgttcacatcatcaagcttatgcttacctactt
gtcccatctattaagcatctcaaaggtgacgcagagaaacgcctagatgcaattcaacgt
gcttcgactttaggtgctggttttatgttggcgaccgaagatttagaaattcgtggagca
ggtgagttattgggtgaacaacaaagtggttcaatgcaggcaattggttatagcttgtat
atggaaatgcttgagaaagcgaccaaagccattcaaaagggtaaaacacctaatttcgat
gcgccattgtcattaactgctgaaatcaatttgcatatgcctgcattgattcctgatgaa
tatttgggagatgtacaccaacgattattattctataagcgtatcagtaacaccgatagc
caagagaaacttgataatattcgtatggagttgattgatcgttttggtattccaccacaa
ccggtgaaacagctgtttagcgtacatcagattcgcttaagagcagaacagttaggaatc
accaaaattgatatcaatagtaatggtggttatatcgaattttcaccagatacaccagtg
caagcgatcagcatcattcagcttatgcagaaaaatccgacctattatcggatggaaggc
ggacagcgtttgaaagtgactgtgcaacttgcagaatatgataaacgtatccagtttatt
gtcgatttgttgaataagttgctcaatgaattgaatgtatag
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