KEGG   Atlantibacter hermannii: NCTC12129_00642
Entry
NCTC12129_00642   CDS       T05790                                 
Symbol
ycfD_1
Name
(GenBank) cupin superfamily protein family
  KO
K18850  50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
Organism
ahn  Atlantibacter hermannii
Brite
KEGG Orthology (KO) [BR:ahn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ahn03009]
    NCTC12129_00642 (ycfD_1)
Enzymes [BR:ahn01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.47  [50S ribosomal protein L16]-arginine 3-hydroxylase
     NCTC12129_00642 (ycfD_1)
Ribosome biogenesis [BR:ahn03009]
 Prokaryotic type
  ribosomal protein modification factors
   NCTC12129_00642 (ycfD_1)
SSDB
Motif
Pfam: JmjC_2 ROXA-like_wH JmjC DUF2826 Cupin_2 AraC_binding
Other DBs
NCBI-ProteinID: VDZ71578
UniProt: A0A447LIM5
LinkDB
Position
1:584920..586053
AA seq 377 aa
MVYIMAYQLNLNWPEFLEKYWQKQPVVLKNAFPNFVDPITPDELAGLAMEPEVDSRLVSH
KNGQWQAANGPFEDFDNLGETGWSLLAQAVNHWHMPSAELVRPFRVLPDWRLDDLMISFS
VPGGGVGPHIDQYDVFIIQGMGSRRWRVGDKLPMRQFCPHPALLHVDPFEPIIDEDLEPG
DILYIPPGFPHDGFTHETALNYSVGFRGPNGRDLISSFADYALENDLGGEHYSDPDLTCR
EHPGRVEQYELDRLRDMMIDMIKQPEDFKQWFGRFATTPRHELDIAPAEPPYEPQEVVEA
LMDGEVLARLSGLRVLHIGDSFFINSERLETVDPVAADALCRYTFISKDELGAALENPAF
AEELTGLINQGYWYFDE
NT seq 1134 nt   +upstreamnt  +downstreamnt
atggtctacatcatggcgtatcaactgaaccttaactggcccgagtttttagagaaatac
tggcaaaaacaacctgttgtgttgaaaaacgccttcccgaattttgtcgatccgattacc
ccggacgagctggccgggctggcgatggaacccgaagtggacagtcgcctggtaagccac
aaaaacggccagtggcaggccgctaacgggccgtttgaagatttcgataatctcggcgaa
accggctggtcgctgctggcgcaggcggtgaatcactggcatatgccgtcggcggagctg
gtgcgcccgtttcgcgtgttaccggactggcgtctggacgatctgatgatctccttctct
gtgccgggcggcggcgtgggtccgcatatcgatcagtacgatgtctttattattcagggc
atgggcagccgccgctggcgcgtgggcgataaactgccgatgcgtcagttctgcccgcat
ccggcgctgctgcatgtcgatccttttgagccgatcattgatgaagatctggagccgggc
gacattctgtatattccccctggattcccgcacgacggcttcacccacgaaacggcgctg
aactactcggtgggcttccgtggaccgaacggccgcgatttgatcagcagctttgcggat
tatgcgctggaaaacgatctgggcggcgagcattacagcgatccggatttaacctgccgg
gagcatccgggccgcgttgagcagtatgaactggatcgtctgcgcgacatgatgatcgac
atgatcaaacagccggaagattttaaacagtggtttgggcgttttgccaccacaccgcgc
cacgagctggatatcgccccggcggagccgccgtacgagccgcaggaagtggttgaggcg
ttaatggacggcgaagtgctggcgcgactcagcgggctgcgcgtgttgcacattggcgac
agcttctttatcaacagtgaaagactggagacggtggacccggttgccgccgatgcgctg
tgccgttacacctttatcagtaaagatgaattaggcgcggcgctggaaaacccggctttt
gcggaagagttaaccggcctgattaatcagggttactggtactttgacgaatag

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