KEGG   Auritidibacter ignavus: QDX25_12240
Entry
QDX25_12240       CDS       T09017                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
aig  Auritidibacter ignavus
Pathway
aig03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aig00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    QDX25_12240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aig03021]
    QDX25_12240
   03400 DNA repair and recombination proteins [BR:aig03400]
    QDX25_12240
Enzymes [BR:aig01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     QDX25_12240
Transcription machinery [BR:aig03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     QDX25_12240
DNA repair and recombination proteins [BR:aig03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      QDX25_12240
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Peptidase_M23
Other DBs
NCBI-ProteinID: WGH81530
LinkDB
Position
2691902..2695417
AA seq 1171 aa
MVASSTSNNSAATNPRHAASAGRVSFAKIAEPLDVPDLLALQTESFDRLVGNERWKQRVA
HAQEIGDDSVATTSGLSDIFEEISPIEDFQGTMSLSFTDPEFSDPKVTENEAKEKDSSYA
APLYVKAEFMNYNTGEIKQQTVFMGDFPLMTEEGTFIINGTERVVVSQLVRSPGAYFERH
PDKTTDKDVYSARIIPSRGAWFELEIDRRDQVSVRLDRKRKQPVTVLLKALGWSESRILE
EFGQYDSMRLTLEKDQTEDQKAALLDIYRKLRPGEPAAVDPAQTLLANLYFTEKRYDLAK
VGRYKLNRKLGVDAPLSDPASSVLTEQDVAQMIHFICALHAGEKTIKGQHNGEEVDIRVE
MDDIDHFGNRRIRAVGELIENQIRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVAS
IKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
ETPEGPNIGLIGSLATFGRINAFGFIETPYRKVIDGKVTDRVEYLTADDELDAQIAQANA
VLNEDSSFAEEQVLCRQRGGDGEPVLAEPSDIDYMDVSPRQMVSAATALIPFLEHDDANR
ALMGANMQRQAVPLLKSEAPLVGTGMEKYVALDAGDSVTATKPGVVTEASADMVTVMNDD
GTTTHYKIQKFARSNQGNAYNQQVRVAEGDRVETMSVIADGPATDNGELALGKNLLVAFM
PWEGLNYEDAIILSQRMVSDDVLTSIHIEEYEIDARDTKLGAEEITRDIPNVSEEVLSQL
DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSKEVRDTSKKVPHGES
GTVIGIRILDREDDDDLPVGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPVEDM
PFLADGTPVDIILNPLGVPGRMNLGQVMELHLGWIAANGWKIEGEPEWLRNLPNLPRETG
PLNVATPVFDGAEAEEIQGLLQSVNPSRDGERLMGENGKAQLFDGRSGEPFPDPISVGYM
YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEL
LTHKSDDVHGRVKVYEAIVKGENIPEPGVPESFRVLVKEMQSLCLNVEVLSSEGQAIEMR
DSDEESFRAAEELGIDLSHAEPDSVDTIGEV
NT seq 3516 nt   +upstreamnt  +downstreamnt
ttggtcgcttcgagcacctcaaataattcagccgctaccaatcctcgccacgccgcctct
gcaggccgagtttctttcgcgaagattgccgaacctctggacgtgcccgacctgttagca
cttcagaccgaatctttcgaccgcttggtcggtaacgaacggtggaaacagcgtgttgcg
catgcccaggaaatcggtgatgattcggtagctaccacatccgggctctccgatattttc
gaggaaatctcacccattgaggatttccagggaacgatgtcgctgtcgttcactgatccg
gaattctctgaccctaaggtcaccgaaaatgaagcgaaggagaaagactcctcttacgct
gctccgctgtacgtcaaggcggagtttatgaactacaacaccggtgaaattaagcaacag
acggtgttcatgggtgacttcccgttgatgactgaagaaggcaccttcatcatcaacggc
actgaacgtgttgtggtttcccagctggtgcgttccccgggtgcctatttcgaacgccac
cctgacaagaccaccgataaggacgtctactcggcccggattatcccgtcccgtggtgcc
tggtttgagctggagattgaccgtcgcgaccaggtctcggtgcgcctggatcgtaagcgc
aagcaaccggtgactgtgttgctcaaggccctgggctggtcggagtcccggattctcgaa
gaattcggtcaatatgactccatgcggttgaccctggaaaaggaccaaaccgaagaccag
aaggcagccctgctggacatttaccgcaagttgcgtccaggtgaaccggcagctgtggat
ccagcccaaactctgctggctaacctgtacttcactgagaaacgctacgatctggctaaa
gtgggtcggtataagctcaaccgcaagctcggcgtcgacgctccgttgtccgaccccgca
tcgagcgtgttgacggagcaggatgtggcgcagatgattcacttcatctgtgctctgcac
gctggcgagaagaccatcaagggtcaacacaacggtgaagaggtcgatattcgcgtcgag
atggacgatatcgaccacttcggtaaccgtcgcattcgcgccgtcggcgagttgattgaa
aaccagatccgcaccggtctggctcgtatggagcgcgtggtgcgcgagcggatgaccacc
caggacgttgaggctattacccctcagactttgattaacatccgtcctgtggttgcttcc
atcaaggagttcttcggaacctcccagctttcgcagttcatggaccagaacaacccactg
gccggtctgacccacaagcgtcgtctctccgccctgggcccaggtggtctgtctcgtgat
cgcgcgggaatggaagtccgcgacgtccacccctcgcactacggtcgtatgtgcccgatt
gagaccccagaaggtcccaacattgggctgattggttcgttggcaaccttcggtcggatc
aacgccttcggtttcattgagaccccgtaccgcaaggtcattgacggtaaggtcactgac
cgtgttgagtacctcaccgctgatgacgagctggacgcccagattgcccaggctaacgcg
gtgctgaacgaggatagctctttcgctgaagaacaggtcttgtgtcgtcagcgcggtggt
gacggtgaaccggtactggctgaaccgtccgatattgactacatggacgtctccccacgt
cagatggtctcggcagccaccgccctgatcccgttcttggagcacgacgatgctaaccgc
gcgctgatgggtgcgaacatgcagcgtcaggcggtgccactgttgaagtctgaagcgccg
ttggtgggtacgggtatggagaagtacgtcgcgctggacgctggcgactccgtgaccgcc
accaaacccggtgttgtcaccgaggcttccgccgacatggtgaccgtgatgaacgacgat
ggcactaccacccattacaagatccagaagttcgctcgctccaaccagggtaacgcctac
aaccagcaggtgcgcgtggccgaaggtgatcgggtggagactatgtcggtcatcgctgat
gggcccgccaccgataacggtgagctggccctggggaagaacctgctcgtggcattcatg
ccgtgggaaggcctcaactacgaggatgcgatcatcctctcccagcgcatggtttccgat
gacgtgctgacctcgatccacattgaggagtacgaaatcgatgcccgtgacaccaagctg
ggcgctgaagagatcacccgcgacatccccaacgtctccgaggaagtgctgtcacagctt
gacgagcgtggcatcatccacatcggtgccgaggtcgaggccggggacatcctggtcggt
cgcgtcactccgaagggtgaaaccgagctgacccccgaagagcgcctgttgcgcgccatc
ttcggcgagaagtccaaggaagttcgtgacacctctaagaaggttccgcacggtgaatcc
ggaaccgtgatcggtatccgcatcctggaccgcgaagacgacgatgatctgccggttggt
gtcaaccagctggtccgtgtctacgtggctcagaagcgtaagatcaccgatggtgacaag
atggctggtcgtcacggtaacaagggtgtgatctccaagatccttcccgtggaagatatg
ccgttcttggccgacggtactccggtcgatatcattctgaacccgctaggtgttccgggt
cgtatgaacctcggccaggtgatggaactacacctgggctggattgcggccaacggctgg
aagatcgaaggcgagcccgagtggttgcgcaacctgcccaacctgccacgtgagaccgga
ccactgaacgtggctaccccggtcttcgacggtgctgaagccgaagagattcagggactg
ctgcagtcggtgaatccttcacgcgacggtgaacgcctgatgggtgaaaacggcaaggcg
cagctgttcgatggtcgttccggtgaacccttcccggacccaatctcggtcggctatatg
tacatgctgaagttgcaccacctggtggacgacaagattcacgcccggtccacgggcccg
tactcgatgattacccagcagccgctgggcggtaaggcgcagttcggtggtcagcgcttc
ggtgaaatggaagtgtgggcgctggaggcctacggtgctgcctacacgctgcaggagttg
ctcacccacaagtccgatgacgtgcacggtcgtgtgaaggtctacgaggccatcgtcaag
ggtgaaaacattcctgagcccggcgttccggaatcgttccgtgtgctggtcaaggaaatg
cagtcactgtgcctgaacgttgaggtcttgtcctctgaaggccaggccattgaaatgcgg
gactcggatgaggagtcattccgggccgctgaagaactcggtatcgatctctcccacgca
gagcccgactctgtggataccatcggggaagtctaa

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