Actinoplanes ianthinogenes: Aiant_50900
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Entry
Aiant_50900 CDS
T07429
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aih
Actinoplanes ianthinogenes
Pathway
aih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Aiant_50900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aih03400
]
Aiant_50900 (mfd)
Enzymes [BR:
aih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Aiant_50900 (mfd)
DNA repair and recombination proteins [BR:
aih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Aiant_50900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BCJ44433
LinkDB
All DBs
Position
5563310..5566918
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AA seq
1202 aa
AA seq
DB search
MQLAGLLPAALRDRGLARARDLARKGFVDSDALDLTAPVSLRPFVVATVAGPGDVGGAQR
PVLAVTATSREADDLADALGCLLEPGRVAVYPSWETLPHERLSPRSDTVGKRLAVLRRLA
HPGEQPLQVVVAPVRSLLQPQLKGLGDLEPVELVTGREAGLEDVARRLSDMAYARVDLVT
KRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEQVERLWAPPCREL
LLTPAVRERAAALGARHPELAEILDKLAEGIPVEGMESLAPALLDGTDSMELLIDCMPAG
THVLLCDPERIRTRAHDLTRTSDEFLEASWAAAAVGGEAPIDVGAVAFRSLADVRAHAAT
LHQPWWTLSPFGLATADSEQPLPWEDAPSVEVSPDSGDAVALAAQPVPLYHGDTARLAGD
LSQWSAAGWAIALVFEGKGTAQRATELLRDAGLGVTPADSISTPIQDGQLLVTCGGLNHG
FVDEASRLAVITGNDISGGRGASTKDMRKMPARRRNTIDPLELKMGDFVVHEQHGIGRYI
ELVQRTVNGADREYLVIEYAASKRGQPGDRLYVPTDQLDQLSRYVGGEQPTLHKMGGADW
QKSKARAKKAVKEIAAQLIQLYAARQASKGHSFGPDTPWQRELEDAFPYTETPDQLAAIH
EVKHDMELQTPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHFNTFT
ERMSQFPVQIKQLSRFQTPKEAALTLEQAGDGTADIVIGTHRLLSKSTRFKNLGLIIVDE
EQRFGVEHKEQLKALRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTYV
GAYDDKQVAAAIHRELLRDGQVFYLHNRVESIDRAARKLRELVPEARVAVAHGQMSEEQL
EKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLILERADLLGLAQLHQIRGRVGRGRERA
YAYFLYPRDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGV
GFDLYVRMVGEAVSAFKGERPEEEPEVKIDLPVDAHLPTDYIAVERLRLEMYRKLAEARD
NVRLEEVIAEMTDRYGEPPAPVVNLIAVARFRQLARAYGLTDVSMQGKHLRFAPLDLPDS
KQLRLKRYHPDSVYKAANEQVSVPRPSTRRVGGEPLRDQELLQWCAQLLKDVLGDAPVPA
RV
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcgccggtctgctcccggccgccctgcgcgaccgcggcctcgcccgagcccgt
gatctggcccgcaagggcttcgtcgactcggacgcgctggacctgaccgcgccggtctcg
ctgcgcccgttcgtggtggccacggtggccggtccgggcgacgtcggcggcgcccagcgc
ccggtgctcgcggtcaccgccacctcccgcgaggcggacgacctggccgacgcgctcggc
tgcctgctcgagccgggccgggtcgcggtctacccgtcctgggagacgctgccgcacgag
cggttgtcgccgcgctcggacaccgtcggcaagcggctggccgtgctgcgccggctggcc
cacccgggcgagcagcccttgcaggtcgtcgtggcgccggtccggtcgctgctccagccg
cagctcaagggtctcggcgacctggagccggtggagctggtcaccggccgcgaggcgggg
ctggaggacgtcgcgcgccgactgtccgacatggcctacgcccgggtcgacctggtcacc
aagcgcggcgagttcgcggtccgcggcggcatcctggacgtcttcccgcccaccgacgag
catccgtcccgagtggagttctggggcgacgaggtggaggagatccgcaccttcgcggtc
gccgaccagcggacgatcgagcaggtggagcgcctctgggcaccgccctgccgggagctg
ctgctcacgcccgcggtgcgggagcgggccgcggcgctcggcgcgcggcaccccgagctg
gccgagatcctcgacaagctggccgagggcatcccggtcgaggggatggagtcgctggcc
ccggccctgctggacggcacagacagcatggagttgctgatcgactgcatgccggccggg
acgcacgtgctgctctgcgacccggagcggatccggacccgggcgcacgacctcacccgg
acctccgacgagttcctggaggcgtcctgggcggcggccgccgtcggtggcgaggcgccg
atcgacgtcggcgcggtcgccttccgcagcctggcggatgtgcgcgcgcacgcggcgacc
ctgcatcagccctggtggaccctgtcgccgttcgggctggccacggccgactcggagcag
ccgctgccgtgggaggacgcgccttccgtggaggtctcgccggactccggtgacgcggtc
gccctggccgctcagcccgttccgctctatcacggcgacacggctcgcctggccggcgat
ctgtcccaatggtccgccgcggggtgggcgatcgcgctggtcttcgagggcaagggcacc
gcgcagcgggccaccgagctgctccgcgacgccggtctcggggtcaccccggccgactcg
atcagcacgccgatccaggacggccagctgctggtcacctgcggcgggctgaaccacggc
ttcgtcgacgaggcgtcccggctcgcggtgatcaccggcaacgacatctccggcggccgc
ggcgcgtccacgaaggacatgcgcaagatgccggcccgccggcgcaacacgatcgacccg
ctcgagctcaagatgggcgacttcgtcgtgcacgagcagcacggcatcggccgctacatc
gagctggtgcagcgcaccgtcaacggcgccgaccgggagtacctggtgatcgagtacgcc
gcgtccaagcgcggccagcccggcgaccggctctacgtgcccaccgaccagctcgaccag
ctgtcccgctacgtcggcggcgagcagcccacgctgcacaagatgggcggcgccgactgg
cagaagagcaaggcccgggcgaagaaggcggtcaaggagatcgccgcccagctcatccag
ctgtacgcggcccgccaggcctccaagggccactccttcgggccggacacgccgtggcag
cgcgagctggaggacgccttcccctacaccgagaccccggaccagctggccgccatccac
gaggtcaagcacgacatggagctgcagaccccgatggaccggctgatctgcggcgacgtc
gggtacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaag
caggtggccgtgctggtgcccaccacgctgctcgcccagcagcacttcaacacgttcacc
gagcggatgagccagttcccggtgcagatcaagcagctgtcccggttccagacgccgaaa
gaggccgcgctcaccctggagcaggccggcgacggcaccgccgacatcgtgatcggcacg
caccggctgctctccaagtcgacccggttcaagaacctcggcctgatcatcgtggacgag
gagcagcggttcggcgtcgagcacaaggagcagctcaaggcgctgcgcgcgtcggtggac
gtgctgaccatgtcggccaccccgatcccgcggaccctggagatggcgatcaccggcatc
cgggagatgtccaccatcgcgaccccgccggaggaacggcaccccgtgctgacctacgtc
ggggcgtacgacgacaagcaggtcgccgccgccatccaccgcgagctgctccgcgacggc
caggtgttctacctgcacaaccgggtcgagtcgatcgaccgggcggcgcgcaagctgcgc
gagctggtgcccgaggcgcgggtcgcggtggcgcacggccagatgagcgaggagcagctg
gagaaggtgatggtcggcttctgggagaaggagttcgacgtcctggtctgcaccacgatc
gtcgagtccggcatcgacatcccgaacgccaacacgctgatcctggagcgcgccgacctg
ctcggcctggcccagctgcaccagatccgcggccgggtcggccggggccgggagcgggcg
tacgcgtacttcctctacccccgggacaaaccgctcaccgagcacgcgcacgagcggctg
gccaccatcgcccagcacaccgagctcggcgccgggatgtacgtggcgatgaaggacctg
gagatccgcggcgccggcaacctgctcggcggcgagcagtccggccacatcgagggcgtc
ggcttcgacctgtacgtgcggatggtcggcgaggcggtcagcgcgttcaagggcgagcgc
cccgaggaggagcccgaggtcaagatcgacctgccggtcgacgcgcacctgcccaccgac
tacatcgcggtcgagcggctacgcctggagatgtaccggaaactcgccgaggcccgggac
aacgtccggctggaggaggtcatcgccgagatgaccgaccggtacggcgagccgcccgcc
ccggtggtgaacctgatcgcggtggcccggttccgccagctggcccgggcgtacgggctg
accgacgtctcgatgcagggcaagcatctgcggttcgccccgctcgacctgcccgactcc
aagcagctgaggctcaagcggtaccacccggactcggtctacaaggcggcgaacgagcag
gtcagcgtcccgcggccgagcacccggcgggtcggcggcgagccgctgcgcgaccaggag
ctgctccagtggtgcgcccagctgctcaaggacgtgctcggcgacgcgcccgtcccggcc
cgcgtgtga
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integrated database retrieval system
