Acidaminococcus intestini: Acin_0782
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Entry
Acin_0782 CDS
T01639
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ain
Acidaminococcus intestini
Pathway
ain03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ain00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acin_0782 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ain03400
]
Acin_0782 (mfd)
Enzymes [BR:
ain01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Acin_0782 (mfd)
DNA repair and recombination proteins [BR:
ain03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Acin_0782 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
AAA_22
AAA_30
RecG_dom3_C
SecA_DEAD
GHL10
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEQ22015
UniProt:
G4Q533
LinkDB
All DBs
Position
797787..801068
Genome browser
AA seq
1093 aa
AA seq
DB search
MMNELIRLLGREKTTKEGIQAWQKASGPLTVTGLSGSIKAGFLCALQTFGKASDPLIILT
PRREDVRLLRRELTPFYPDQAMRELYPLGLIHGEIDTRNEEVMAERAAALEMILKKEAAI
IFVTAEAAIQKLPRPDGLLRDSITLTHGDEKNRDKLIERLVKEGYERTDQVETLGQFSVR
GDILDIFPINAKDPVRIEWFDETIDAIRRFSLEDQRSIGGLTKVDIMPIASGEKEAESSL
LDYVSPDQLLVLDEASAFFEEAKKSYLDNREFKDQLFSEKELLERSQKSHLLVVSALSQP
LYQAYPRLAIKVRAAAPYNRSWDLLIKDLKGWIKEGIHPLIMMGTRDKAFGTAQHLQNEG
LPMTFVQKGSLIPEKGGAVFEGGLSHGFHFWDENWLLLTEADIFGSRKERRQKKKIRGAG
PALTYFTDIKAGDYVVHDTQGIGRYLGVETIVIDGIHRDYLKLQYAQGDKLHVPVEQVGL
LHKYIGSEGTPPRLSRMGRSDWQKAKKKAQKAITILASELLRLYAQRKITPGHAFAPDTP
WQKEFEDRFPFEETPDQLKAIQEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMD
GKQVAVMAPTTVLAQQHLITFQNRMDAFGVRIEMLSRFRSRKEQKDTLDKLAKGDLDIVI
GTHRLIQPDVHFKDLGLLIIDEEQRFGVAQKEKIKQWSSGIDVLTLSATPIPRTLHLALV
KGRDMSVIESPPEDRLPVETYVAEYDDGMVKEAIEREIRRGGRIYYVHNRIEALDRIAHR
LREMIPGLSIGVAHGRMTEDELEEVMVGFYQGDYDVLLSTTIIENGLDVPLANTIIIDGA
ENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDKALSEVSQKRLQAIRDFTELGAGFKIAMR
DLEIRGAGNLLGAEQHGQIAGVGFALYCRLLEDTIKALQEGKSPEEVLHDPTINMKLDAY
IPDDFIDNPRYKLEIYRRLGSMKYEEREDFMDEIIDRFGTPPKELVTLWRVAAIRALCRD
LVVDAVTARPGSLTIRFNPHSKANPDVIRDLVKEYVPRLTFSLNPVPQLVLRTTGPVSDA
LTFLEKNLPRLLN
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatgaattgatccgcctattagggcgggaaaagacaacaaaagaaggaatccaa
gcttggcaaaaggcctcaggccctttgacagtgaccggcctgtcaggatccatcaaagcc
ggctttttgtgcgctcttcaaacctttggtaaggcctcggatccgttgatcatcctgacc
cctcgaagggaagacgtgcgtcttttgcgccgtgaactgaccccgttctatccggatcag
gccatgcgtgaactttatccgcttggactcatccatggtgaaatcgatacacgcaatgaa
gaggtcatggcagaacgggcagctgcccttgagatgattctcaaaaaagaagccgccatc
atctttgtcacggcagaagctgccatccagaaactgccaaggcctgatggccttctgcgg
gacagcatcaccttgacccatggggatgaaaaaaatcgtgacaagctcatagagcgccta
gttaaagagggatatgaacgcacggatcaagtcgaaaccttgggccaattttccgttcgc
ggtgacatccttgacatttttcccattaatgccaaggatccggtccggattgaatggttt
gatgaaaccatcgacgccatccgccgtttttccttggaggaccagcgcagcatcggcggc
ctcacaaaggttgatatcatgcccattgcttctggcgaaaaggaagcggaatccagcttg
cttgattacgtatcgcctgaccagcttcttgtccttgatgaagcttccgcgttttttgag
gaagccaagaaatcctatcttgacaaccgggaattcaaggatcagctgttttcggaaaag
gaactgctggagcgctcccaaaagagtcatctccttgttgtgagcgccctttcccagccc
ctttatcaggcctatcccagacttgccatcaaggtgcgcgctgcggcgccttataaccgc
agctgggatcttctcatcaaggatctcaaaggatggatcaaagaaggcatccatcccctc
atcatgatgggaacccgggacaaagcgtttgggacggcccaacatcttcaaaatgaaggg
ctccccatgacctttgtccaaaaaggcagcctcatcccggaaaagggaggagccgtcttt
gagggtggcctgtcccatggatttcatttctgggatgagaactggctcctgctaacggaa
gccgatatcttcggttcccgcaaagagcggcggcagaagaaaaaaattcgcggtgccggt
cccgccttgacttattttacggatatcaaggcaggcgactatgtcgtccatgatacacag
ggcataggccgctatttaggggtcgagaccattgttatagatggcatccatcgggattac
cttaagctccaatatgcccagggtgacaaacttcatgtgcctgttgaacaggtagggctc
ctccataaatacatcggcagcgaaggaacgccgccacgcttatcccgtatgggccgctct
gattggcaaaaagccaagaaaaaggcccaaaaagctatcaccatccttgcttcggagctc
ctgcgcctttatgcccagcgaaagattacgccgggacatgcttttgccccggatacgcct
tggcagaaagaatttgaggaccgttttccttttgaggaaacgccagatcagcttaaagcc
atccaagaaatcaaggctgatatggaaaagcctgttcccatggagcgtcttttgtgcggc
gacgtgggatacggcaagacggaagttgccatccgggcagctttcaaagcggtcatggac
ggcaagcaggtggctgtcatggccccgacgacggttcttgcccagcagcatctcatcacc
tttcaaaaccgcatggatgcctttggtgtaagaattgaaatgctgagtcgcttccgcagc
cgtaaggagcagaaggatacactggataagcttgcaaaaggggatcttgacattgttatc
ggcacccatcgcctgattcagcccgatgtccacttcaaggacctgggccttctcatcatc
gatgaggaacagcgttttggtgtggcccagaaggaaaaaatcaagcagtggagttctggc
atcgatgtccttaccctgtcggcaacgcctattccgcggaccctccatttggccttggta
aagggacgggatatgagcgtcatcgaatcacctccggaagaccgattgccagtagaaacc
tatgtggcagaatacgatgatggcatggttaaagaagccattgaacgggagatccgccgt
ggcggccgcatctactatgtccataaccggattgaggccttggaccgcattgcccaccgt
ctgcgggaaatgattcctggtctgtctattggtgtagcccatggccgcatgacggaagat
gaactggaagaagtcatggtcggcttttaccaaggggactatgatgtcctgctttcaacg
accatcatcgagaatggacttgatgtgccccttgccaatacaatcatcatcgatggggcc
gaaaactttggcctttcccagctttatcagatgcgaggacgggtgggacgctcttcgcgc
cttgcctatgcgtattttctttataaaaaggataaggccctgtctgaagtctcgcaaaaa
cgccttcaggccatccgcgattttacggaacttggcgctggcttcaagattgccatgcgg
gaccttgagatccgcggcgcggggaaccttctcggggcagagcagcatggccagattgcc
ggtgtagggtttgctctttactgccgcctgctggaagacacaatcaaagctctccaggaa
ggcaagagtccggaagaggtccttcacgaccctaccatcaatatgaagcttgatgcgtac
atcccggatgacttcatcgacaacccgcgctacaaactagaaatctaccgccgtcttggc
agcatgaagtatgaagaacgggaggatttcatggatgaaatcatcgaccgtttcggaacc
ccgcccaaggaactcgtgacgctgtggcgggtggctgccatccgggccctgtgccgagac
cttgtagtggatgccgtcaccgcacgccccggttccctgacgattcgcttcaacccgcac
agcaaggccaatcccgatgtcattcgtgaccttgtgaaggaatatgtgccgcgtcttact
ttcagccttaaccccgtgcctcagctcgttttgcggacaacaggccctgtcagcgacgcc
ctgacttttctcgaaaagaacctgccccgcctgctgaactga
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