Arachis ipaensis: 107613017
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Entry
107613017 CDS
T04301
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
aip
Arachis ipaensis
Pathway
aip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107613017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aip03019
]
107613017
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107613017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_11
TPR_8
TPR_14
TPR_17
TPR_19
TPR_12
TPR_9
TPR_6
TPR_7
BTAD
TPR_15
Motif
Other DBs
NCBI-GeneID:
107613017
NCBI-ProteinID:
XP_016170319
LinkDB
All DBs
Position
B08:complement(9236683..9249182)
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AA seq
1183 aa
AA seq
DB search
MESQTHNEEQGVEHLFRRLQDFPDDASLHFDIGLFLWEKGGEANGSAEKAAEHFIESAKL
NPKNGEPFKYLGHYYGRISIDTQRALKCYQRAVALNPDDSDSGEALCNLLYQGGKDSLEA
AVCREASEKSPRAFWAFRRLGFLQVHQKKWSEAVQNLQHAIRGYPTCAELWEALGLAYQR
LGRYTAAIKSYGRAIELDDKMVFALVESGNISLTLGSFRKGVEQFRQALEISSHCVPAQY
GLALGLLCLAKDCMNLGAFKWGVSLLEEASEVARASAYSVRNVSCIWKLYADVQLAYARC
YPWIEEVQELEANKEAFSASIISWRRTCLSAARLARFSYQRALHLCPWQANIYADIAVTS
DLITSLDKDYERDLDACRQLPEKMCVGALLLEGDNYEFWVTLGCLSDQNALNQHALIRGL
QLNVSLAVAWGYLGKLYSKMSKKKLARQMFDRARSIDPSLALPWASMSADCCVRESAPDE
AFESCSQAVQMMPLAEFQIGLTKLAMLSGHLSSTQVFGAIQQAVQRSPHYPESHNLHGLV
CESRKDYRSAAISYRIALHAISIASLDNQNSQIKDVSINLARSLCKAGNAVDAIQECENL
RKEGMLDFEVFQVYAISLWQLGKNDLALSIVRSLAANVSSMEKTAMEISVSFIFRLLYYI
SGLDAVITNIMKMPKELIQSSKVNFVMSAIDALDGHNRLGFLVSSNLYFLKDHDEIDRVH
FLIALGKLVKNGHDGFLAVQSGIAYLRRILHMFPNCSLIRNLVGYLSLSGKESNSCHLAT
RCCKLDHLDLSDKEGLKSASDIHGAAVVACYANGNSNPKSTFQTCTNQYSRGPATIRYLQ
RYFHQKPWNHDARYLLILTYFQRAREERFPHQLCVILNRLICVALSNEFCGKKEMCYEYR
QFQLLLCASEISLQCGNHITSISHAQKASVLMLPDNYLFFAHLLLCRVYAIKGDLLNCKK
EYMRCLELRTDCHIGWMSLKLMECHYQLQIDSNLIDSNFEECLKKGANSWNMWIAVYNLV
RGLISFHQKDLVSAEELMREACSMAGFESCLFLCHGAICMELARQCGGSMLLSWAVDSLN
RFHELLPISLPLASLLVAQAEGSLGAKDKWDRSIRLEWYSWPSVMRPAELYFQMHLVVRQ
LKDGPNVTGRLESSHSAWRWVIRAIHMNPSCMRYWKVLQKLME
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggaatctcaaacacataatgaggaacaaggtgtagaacatctcttcagacgcttgcag
gatttcccagatgatgcgtcgctgcattttgatattggcttattcttatgggaaaaagga
ggagaagcgaatggatccgcagaaaaagcggctgaacatttcattgaatcagccaaattg
aaccccaagaatggagaacctttcaaatatcttggtcattattatggccgcatttccatt
gatactcagagagcccttaagtgttatcagcgagctgttgctctcaatcctgatgattct
gattctggggaagctctttgcaatttactataccaaggaggaaaggatagtttggaggca
gcagtatgtcgtgaagcttctgaaaagtcaccaagggccttttgggcattccgtagattg
ggtttcctgcaggttcatcagaagaaatggtctgaagctgttcagaatcttcaacatgcc
atacgaggctatcctacatgtgctgaactgtgggaagctttgggccttgcttatcagcga
ctgggcaggtatactgcagccataaagtcttatggccgtgccatcgagttggatgataag
atggtctttgctttggttgaaagcggaaatatctcattgacacttggttcatttaggaag
ggagttgaacaatttcgacaagctttggagatttcatcacattgtgtgcctgcacaatat
gggcttgctttggggctgctttgtttagcaaaagattgcatgaacctgggagcatttaag
tggggggtttctttattagaggaagcatctgaggttgcaagagcaagtgcttattctgtt
aggaatgtctcatgtatttggaaactatatgctgacgttcagcttgcatatgcaagatgt
tatccttggattgaggaggtccaagaattggaagctaataaggaagctttcagtgcttcc
atcatttcttggaggagaacctgtctttcggcggcaagacttgctaggttttcgtatcaa
cgagccttgcacttgtgtccatggcaagcaaacatttatgcagatattgctgtaacttca
gatcttattacctcattggacaaggattatgaacgagacttagatgcatgtaggcagctg
ccagagaaaatgtgtgtgggagctttgctgcttgaaggtgacaattatgagttttgggtg
acattgggatgtttgtctgatcaaaatgcactaaatcaacatgctctaatcagaggattg
cagttgaatgtatctctagctgttgcttggggatatcttgggaagctttatagtaaaatg
agcaaaaagaaattggcacggcaaatgtttgatcgtgctagaagtattgatcctagcctt
gctttgccatgggcaagcatgtcagctgattgttgtgtgagggagtctgctcccgatgag
gcgtttgagagctgttcccaagcagtgcagatgatgcctttagctgaattccaaattggg
ctcactaagcttgctatgctgagtggccatctttcatctacacaggtttttggagctatt
cagcaagctgtgcagcgatctcctcactatcccgaatcacataatttacatggtctggtc
tgcgagtctcgaaaagattacagatctgctgctatttcttacaggatagccctccatgcc
attagcattgcctcgttagataatcaaaactcacagataaaagatgtatcaattaatttg
gcgagatcactttgtaaggctgggaatgctgttgatgctatacaggaatgtgaaaatttg
aggaaagaaggaatgcttgacttcgaagtttttcaagtatatgcaatctcgttgtggcaa
cttggtaaaaatgatttagcactctcaatagtcagaagtcttgcagcaaatgtttcttct
atggaaaagacagccatggaaatctccgttagtttcatctttagattattatactacatc
agtggactagatgcagtcataaccaacattatgaaaatgccaaaggagcttattcaaagt
tcaaaagttaattttgttatgtctgctatcgatgctcttgatggacacaatcgtcttgga
tttcttgtctcaagtaacctatattttctcaaagatcatgatgaaattgacagggtgcac
tttttaatagcacttggtaaactggtgaaaaatgggcatgatggcttccttgcagttcag
agtggaattgcctacctcagaaggattctgcacatgttccctaactgtagtttgataagg
aaccttgttggctatctctcactatctggtaaagagtcgaacagttgccatctggctaca
aggtgttgtaaactggaccatcttgacctttctgataaagaaggtttaaaatcagcttct
gatattcatggtgctgcagtagttgcctgctatgccaatgggaacagcaacccaaagtct
acttttcaaacttgtacaaatcagtattctagaggtcctgcaacaatccgatacctgcag
agatactttcatcagaaaccatggaatcatgatgctcggtacttgcttattcttacctat
ttccagagggcacgtgaagagagatttcctcatcagctgtgtgttattctaaatcgtcta
atatgtgttgctctttcaaatgaattttgtggaaagaaagaaatgtgctatgaatataga
caatttcaacttctactttgtgcttctgagatcagtttacaatgcgggaatcacatcacc
tctatatcccatgcccaaaaggcctctgtactcatgcttcctgataattatttgttcttt
gcccacctactattgtgccgtgtatatgccataaaaggtgatcttttgaattgtaagaaa
gagtatatgcgatgcttggagttgaggacagattgccatattggttggatgtctctcaaa
cttatggaatgccattatcaattgcaaattgattcaaatctcattgattcgaactttgaa
gaatgccttaaaaagggtgcaaattcatggaatatgtggatagctgtgtataacctggtg
aggggtttgatttcctttcatcagaaggatttagtctcagccgaagagctcatgcgagag
gcttgttcaatggcaggttttgaaagctgcctttttctatgtcatggtgctatctgcatg
gagcttgccaggcagtgtggcggttcgatgctcctatcatgggctgttgatagtcttaac
agatttcatgagcttttgccaatctctttgcctcttgcctccttattggttgctcaagca
gaaggaagcctcggtgcaaaagacaaatgggacagaagcattcgccttgaatggtattcc
tggccatcagtaatgaggcctgcagagctctactttcaaatgcatttggttgtaaggcag
ttaaaagatggacccaacgtcacaggtagattagagtcctctcatagtgcttggagatgg
gtaattcgggcaattcacatgaacccttcttgcatgagatattggaaggtcttacagaag
cttatggagtag
DBGET
integrated database retrieval system
