Arachis ipaensis: 107629538
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Entry
107629538 CDS
T04301
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
aip
Arachis ipaensis
Pathway
aip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107629538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aip03041
]
107629538
Enzymes [BR:
aip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107629538
Spliceosome [BR:
aip03041
]
Complex A
U2 snRNP components
U2 related factors
107629538
Complex B
107629538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107629538
NCBI-ProteinID:
XP_016187841
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All DBs
Position
B03:11293613..11325045
Genome browser
AA seq
1116 aa
AA seq
DB search
MEDGKHKSRREDSEVKEDDSKRSHRDRGGEKDKDRSNGKHRDREKRDRDRDSRRHDRDHS
SDDSDDRYEREREKEKRRDKDKEERRAREKKREREREREKEREKEREREEKERERRERAK
EKERERERERERREDRERGREREREREKDKDRREREREKEIERERGRRVRDREKRREVDS
DYSDDDSRERERDRKRHKNSDAKVKERKPTHEEEIEEEHKRLDEEMEKRRRRVQEWQELR
RKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTAMDVDEDEKPVDKEPG
DPMVADGDNGAITSDLQEGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNTVCSSIPDKTN
DKKLKDRGDEQGRSGQARKVSNNKSIGRIIPGEDSDSDYSDLQVDDDDIEENDEEFMKRV
KKSKADKLSIVDHSKIDYQPFKKNFYIEVKDVSRMTPEEVAAYRKELELKIHGKDVPKPV
KSWHQTGLTSKILETIRKLNYEKPMPIQAQALPVIMNGRDCIGIAKTGSGKTLAFVLPML
RHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISE
LKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR
PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVELRPEKERFHRLLE
ILGEWYEKGKILIFVQSQEKCDALFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCN
MLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYA
PDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAK
KAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAHILAASKGTVPAIPSPISPAQLISNG
GLTVPLPAVLGNLQTTTVLPTGLPLTTNDGAARAALAAINLQHNLAKIQSEALPEHYEAE
LEINDFPQSARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIAGPGERKLYLFIEGPSE
QSVKRAKAELKRVLEDITNQALQLPGGSQPGKYSVV
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggaagatggaaagcataaatcaaggagagaagattctgaggtgaaggaagatgattcc
aagaggagccaccgtgacaggggcggggaaaaggataaggatagaagcaatgggaagcat
agggatagggagaagagggaccgcgaccgggatagcagaaggcatgatagagatcatagt
agtgatgattctgatgataggtatgagagggagagggagaaggagaagcgcagagataaa
gacaaggaagaaagaagagctcgcgagaagaaaagagaaagggagagggaaagggaaaag
gaaagggaaaaggaaagggagagggaagaaaaggagagggaaaggagagaaagggcgaag
gagaaagaaagagagagagaaagagaaagagaaaggagggaagatagagagagggggcgg
gagagggaacgtgagcgtgaaaaggataaggatagaagggagcgtgagagagagaaggaa
attgaaagagaaagggggaggagagtgcgcgaccgggagaagcgtagggaagttgatagt
gattatagtgatgatgattctagggagagggagagagacaggaagaggcacaagaactcg
gatgccaaggtgaaggagagaaaacctactcatgaagaggagatagaggaagaacacaaa
agattggatgaagaaatggaaaagaggaggagaagagttcaggagtggcaagagctgagg
aggaagaaggaagaagctgagagagaaaagcagggtgaagcaagtgctagtgaaccaaag
ttgggaaaggcctggacccttgaaggggaatctgatgatgaagaagcaactggtacaggg
aagccagatactgcgatggatgtagatgaagatgaaaaacctgttgataaagagcctggg
gatcctatggtggcagatggtgataatggggcaattacgtctgatttacaagaaggaact
gctggtgctcctgaggatgaggaaattgatccattggatgccttcatgaattctatggtt
ctacctgaagttgaaaagctgaacaacactgtttgctcttcaatacctgataaaactaat
gacaagaaactcaaggatagaggggatgagcagggtcgtagtggacaggcaaggaaagtt
tccaataataaatcgattggaagaataattcctggtgaagactctgactctgattattca
gatcttcaagttgacgatgacgacattgaagaaaatgatgaggagtttatgaaaagagtg
aagaagtcaaaagctgataagctgtctatagttgaccattcaaagattgattatcaacct
ttcaagaaaaatttctacattgaagtgaaggatgtctcaaggatgactcctgaagaagtt
gctgcataccggaaggagctggagttgaagatacatgggaaggatgttccaaagccagta
aaatcatggcatcagactggacttactagcaaaattttagagacaataagaaagcttaac
tacgaaaagccgatgcctattcaagcccaggcactgcctgtaataatgaatggtcgagac
tgcattggcattgctaaaactggttcaggcaaaacacttgcttttgttttgcctatgttg
aggcacatcaaggatcagccaccagttgttactggagatggaccaattgggcttatcatg
gctcctacaagggagcttgttcaacagatttatagtgatataaagaagtttgggaaggta
ctgggtctaagatgtgtacctgtgtatggaggttctggtgttgctcaacaaattagtgag
ttgaagcgtggagctgagatagtggtttgtactccaggtaggatgattgacatactatgt
accagtggtggcaaaataactaacctgcgcagggttacttatttggtcatggatgaggct
gatagaatgtttgacatggggtttgaaccccaaatcacaagaattgttcagaatatccga
ccagatcgtcaaactgttctattttctgctactttcccccgccaggttgaaattcttgcc
cgcaaggttctaaataaacctgttgaaatacaagttggtggcagaagtgttgtgaacaag
gacataacacagctggtggagttgagaccagaaaaagaaagatttcataggctattagag
atattgggtgaatggtatgagaaaggaaagattttgatatttgtccagtcacaggaaaaa
tgtgatgctttgttcaaggatttgctaaagtctggttatccttgcttatctcttcatgga
gctaaggaccagacagatcgtgaatccacaattgctgatttcaaaagcaatgtctgcaat
atgttgattgcaactagtattgctgccaggggactagatgtcaaggagcttgaattggtt
atcaattttgatgttcctaatcactatgaagattatgttcatcgtgttggccgcactggc
agagcaggccgaaagggttgcgctattacttttatttcggaggaagaagcaagatatgca
cctgatttggcaaaagcattggagctatctgagcaagttgttcctgatgacctgaaagca
cttgctgatggctttatggcaaaagtgaaacaagggcttgagcaggctcatggaactggt
tatggaggcagtggctttaaatttaatgaagaagaagacgaggagaggagagcagcgaag
aaagctcaagccaagggatatgggtttgaagaggataaatcagattcggaagatgaagat
gaaaatattaggaagtcgggaggtgacatctcacagcttgctcatattcttgctgcctca
aaaggaactgtccctgctatacctagccccatctctcctgctcagctgatttctaatggt
ggactaactgttccgttgccagctgttcttggtaatctccaaactactacagttttgcct
acagggcttccccttactacaaatgatggggcagctcgggcagcattagctgctattaac
ctgcagcacaacttagctaagatacagtctgaagcattgcctgagcattatgaagctgaa
ctagagataaatgatttccctcaaagtgctcggtggaaagtcacacacaaggaaaccttg
ggtccaatttctgagtggacaggagccgctattaccaccaggggacaatatttcccacct
ggtaaaattgcgggacctggggaacgcaagctctacttgttcattgagggtcctagtgag
cagtctgttaagagagctaaagcagagttgaaacgtgttttggaagacatcacaaatcaa
gctttacaacttcctggtggatctcaacctggcaaatactctgttgtttaa
DBGET
integrated database retrieval system
