Arachis ipaensis: 107640326
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Entry
107640326 CDS
T04301
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aip
Arachis ipaensis
Pathway
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107640326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107640326
03019 Messenger RNA biogenesis [BR:
aip03019
]
107640326
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107640326
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107640326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
107640326
NCBI-ProteinID:
XP_020979319
LinkDB
All DBs
Position
B05:complement(20127847..20131424)
Genome browser
AA seq
698 aa
AA seq
DB search
MANGITHEPSPSMLVRRFNALLPQCQGYLKAEEIVWTYGLLLSELTSNVNSIISDFTIIA
GQQRKHAKGIADAICNRILEVPADKKIPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAY
RQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPIL
GAHVIKPQSLQQMEHSSSIMDNVGGDKLDSTETVGNTREGGLNEWQQKRFSSDGWNIFQT
SKTYNLNDEQQRQSPRALIEAYGCDKGREILSTKLLLVEQPGRNGLGSKFPLASWQDTEE
EEFDWKDMNPGLVDCNTNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAALFAVNAHAT
CPSDLNPAFSLQKRPRSLFEPINVNNNTNVGHGPNRTLFIHDQLPNQPGPISSNLQNHGQ
APQLQFLPPQVPSSTQISHGALISTPISNPLPDMQGQSLHLHGGTLPLLHPSLPTAPSQM
MSHPHADASVTSQPPPAYLNLISSLVNHGVISVINPPTNPPTGLDSIGTEFDPDILKVRH
EGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMW
LSGAEGRCALCGEGFDEFYSDEMDEWMYRGATYLKAPMGITLATMDRHQLGPIVHSKCRS
DSDSTMPSTNMEPTKKVVRKKECGSTKHQFCAPLIRTY
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatggtatcacgcacgagccttctccttccatgctagtccgccggtttaacgcc
ttacttccccagtgccaaggctacctcaaggccgaagaaattgtttggacgtatgggcta
ttgttgtcagagctcacctccaatgtgaactccatcattagcgatttcactatcattgcc
ggccaacagaggaaacacgccaagggcatcgcggatgccatttgcaatcggattcttgag
gtgcctgctgataaaaaaattccttctctctatcttctggacagtattgtgaagaatttt
ggccaggaatatgttaaacacttctctttacgtctacctcaagtttactgtgaggcatac
aggcaggtccagcccaatctgcattctgttctgcaacgtctctttggtacctggtcaaag
atctttcctccctctgtcctaagtaatattgaagctcaattgcaatcttcaccagcagtt
aataatcaacaatcctttgctaatcaccttggggcatatgattttcgtggaccgattctt
ggggctcatgttattaaaccacaatctttgcagcagatggaacactctagttcaattatg
gataatgttggtggtgataagttggattcaacggaaactgtaggtaatacaagagaagga
gggttgaatgaatggcagcaaaagagattttctagtgatggttggaacatatttcaaact
tccaagacttataatctcaatgatgaacaacaacgtcaaagtccaagagctcttattgag
gcatatggttgtgacaaaggccgtgaaattcttagtactaagcttttgttggtggagcag
cctggcagaaatggtttagggagcaagtttccattggcatcatggcaggacactgaagaa
gaggagtttgattggaaagatatgaatccaggattagtagactgtaatacaaacagtagt
tctatgcaatcaagtgttagattctccaggaaaaggaagttatctaatgatctatctaat
tcttcacagtacccctttaatatgggggctgctctctttgctgtcaatgctcatgctact
tgcccttccgacttgaatccagcattttcattgcaaaaacgtcctaggagtctgtttgaa
ccaataaacgttaataataacaccaatgtgggtcatggtccaaatagaactttgtttata
catgaccagttgcctaatcaacctggaccaatttcctctaacctgcaaaatcatggacaa
gcacctcaactacagtttcttccacctcaagttccatcttcaacacaaattagtcatggt
gccttaataagtacgcccatctcaaatccattacctgatatgcagggccaaagtttacat
ttacatgggggaaccttgccacttttacatccaagcctcccaactgctccatcacaaatg
atgtctcatccccatgccgatgcttcggtgacaagtcaaccaccacctgcatatcttaat
ttgattagttcactagtgaaccatggtgtgatctcggtaattaatccccccaccaatcca
cccaccggactggattccattgggacagagttcgatccagatatcttgaaggttcgtcat
gaaggtgtaatcagtgccttatacggtgatcttcctagacaatgcacgagctgcggtctc
cgattcaaaaggcaagatgagcacagtagacatatggattggcacgtgactaggaaccga
atgtcgaaaagccggaagcagaaggggtctcaaaagtggtttgcaagtgggagcatgtgg
ctaagtggtgcagagggtcgatgtgcactgtgtggagagggcttcgatgagttctacagc
gacgaaatggatgagtggatgtatagaggagccacataccttaaggcacccatgggaata
acattggccaccatggacagacatcaactagggcccattgttcattccaaatgcagatct
gactctgactctactatgccctcaaccaacatggaacctaccaagaaagtagtaagaaaa
aaagaatgcgggtcgaccaaacatcaattttgtgcacccttaattaggacttactaa
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