Arachis ipaensis: 107642409
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Entry
107642409 CDS
T04301
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aip
Arachis ipaensis
Pathway
aip03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107642409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107642409
03019 Messenger RNA biogenesis [BR:
aip03019
]
107642409
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107642409
Messenger RNA biogenesis [BR:
aip03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107642409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_4
DUF3349
zf_UBZ
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
107642409
NCBI-ProteinID:
XP_016201237
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All DBs
Position
B05:2053069..2057214
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AA seq
654 aa
AA seq
DB search
MLVGRFKALLSQRQGYPKSFPAEEIVRTYGLLLSELTSNVNPIITDLTIIAGQQRKHAKG
IADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHS
ILQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGEYDFRGPILGAHVIKPQS
LQQMEHSSSIMNNVGGDRLDSTGTVGNTREGGLNEWQQKRFSSDSWNIFQTSKTYNLNDE
QQRQSPRALIEAYGCHKSREIPSTKLLLVEQLGRNGLGSKFPLASWQDTEEEEFDWKDVN
PGLVDCSRNNSSMQSSVRFSRKRKLSNDLSNFSQYPFNMGATHPSGLNLAFPLQKRPNVG
HGPNKTQFIHDQLPNQPGPISSNLQIHGQTPQLQFFPPQISSSTQISHGSSLQGHGASIS
TPISNPLPDMQDQSLQLHGGTLPPLCPSLPTAPSQMMSHPHADASVTSQPPPAYLDLISS
LVNHGVISVTNPPTNPPTGLDSIGTEFHPDILKVRHEGVISALYGDLSRQCTSCGLRFKR
QDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPKLLAPEETEEM
KDEEELKRIRVDVHYVERASMSFTATKWTSGCIEEPHTLRHPWEQHWPPWTDIN
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtgggtcggtttaaagccttactttcacagcgccaaggctaccccaagtctttc
cctgccgaagaaattgttcgaacctatgggctattgttgtcagaactcacctccaatgtg
aatcccatcattaccgatctcactatcattgccggccagcagaggaaacacgccaagggc
atcgccgatgccatttgcaaccggattcttgaggtgcctgctgataaaaaacttccttct
ctctatcttctggacagtattgtgaagaattttggccaggaatatgttaaacacttctct
ttacgtctacctcaagtttactgtgaggcatacaggcaggttcagcccaatctgcattct
attctgcaacgtctctttggtacctggtcaaagatcttccctccctctgttctaagcaat
attgaagctcaattgcagtcttcaccagcagttaataatcaacaatcctttgctaatcac
cttggggaatatgattttcgtggaccgattcttggggcacatgtcattaaaccacaatcc
ttgcagcagatggaacactctagttcaattatgaataatgttggtggtgataggttggat
tcaacgggaactgtaggtaatacaagagaaggagggttgaatgaatggcagcaaaagaga
ttttctagtgatagttggaacatatttcaaacttccaagacttataatctcaatgatgaa
caacaacgtcaaagtccaagagctcttattgaggcatatggttgtcacaaaagccgtgaa
attcctagtactaagcttttgttggtggagcagcttggaagaaatggtttagggagcaag
tttccactggcatcatggcaggacactgaagaagaggagtttgattggaaagatgtgaat
ccaggattagtagactgtagtagaaacaacagttctatgcaatcaagtgttagattctcc
aggaaaagaaagttatctaatgatctatctaatttttcacagtacccctttaatatgggg
gctactcatccttccggcttgaatctagcatttccattgcaaaaacgtcctaatgtaggt
catggcccaaataaaactcagtttatacatgaccaattgcctaatcaacctggaccaatt
tcctctaacctgcaaattcatggacaaacacctcaactacagttttttccacctcaaatt
tcatcttcaacacaaattagtcatgggagctctttgcaaggacatggtgcctcaataagt
acgcccatctcaaatccattacctgatatgcaggaccaaagtctacagttacatggggga
accttgccacctttatgtccaagcctcccaactgctccatcacaaatgatgtctcatccc
catgccgatgcttcagtgacaagtcaaccaccacctgcatatcttgatttgattagttca
ctagtgaaccacggtgtgatctcggtaactaatccacccaccaatccacccactggactg
gattccattgggacggagttccatccagatatcttgaaggttcgtcatgaaggtgtaatc
agtgccttatacggtgatctttctagacaatgcacgagctgcggtctccgattcaaacgg
caagatgagcacagtagacatatggattggcacgtgactaggaaccgaatgtcaaaaagc
cggaagcagaaggggtctcaaaagtggtttgcaagtgggagcatgtggctgagtggtgca
gaggcttcgggaaaggaatcaattccaaagttgttggctcctgaggagacagaggaaatg
aaagatgaggaagagttgaagaggatcagagtagatgtgcactatgtggagagggcttcg
atgagttttacagccacgaaatggacgagtggatgtatagaggagccacataccttaagg
cacccatgggaacaacactggccaccatggacagacatcaattag
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