Actinomyces israelii: NCTC12972_00776
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Entry
NCTC12972_00776 CDS
T06659
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
air
Actinomyces israelii
Pathway
air03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
air00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12972_00776 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
air03019
]
NCTC12972_00776 (deaD)
03009 Ribosome biogenesis [BR:
air03009
]
NCTC12972_00776 (deaD)
Enzymes [BR:
air01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12972_00776 (deaD)
Messenger RNA biogenesis [BR:
air03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12972_00776 (deaD)
Ribosome biogenesis [BR:
air03009
]
Prokaryotic type
rRNA helicases
NCTC12972_00776 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
adh_short
Motif
Other DBs
NCBI-ProteinID:
VEG53730
LinkDB
All DBs
Position
1:complement(871079..873595)
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AA seq
838 aa
AA seq
DB search
MSNSVNGSEPTGRSGAAPETAPLSLNDLFSAAVDSTSPEDFNSPVSADTPEDPADLDHEE
EADDVDTNAPELDPEDESEEEETDETDDDIDEDQVDGHAAFLEGDDEEPEPAKSSEEMTF
ADLGLPEDLLRAVTDMGFQTPTPIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAV
DARNGAVQALVLAPTRELALQSAEAISDMAHRSRGLDVVAVYGGAPYGPQIGALKAGAQV
VVGTPGRIIDLLEKGALTLEEVKFFVLDEADEMLRMGFAEDVETIASDIPGERRTALFSA
TMPPAIQAVARQHMTNPVHVEVSRQASTVDTVHQTYAVVPFRHKIGAVARVLAVTEAQAA
IVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVAARG
LDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLTGTRL
EEITLPSPADVSAHRARRLLERVTARLERGRLEMYSELVAAKAEELEVEVTDIAATLLAL
SVGDEGPRTREERKGEPRQRVRREENVDSEGTFVSASFEGGRERRERPEGKPGAARGGRR
HEDGFGTTYRLEVGHRDRVLPGAIVGAIANEAGISGSDIGRIDILQSFSLVEVHTPLSQE
QLDRLKHATFGGRELRIRVDQGPGHGGDNDGNAPSDFAGERSGRPRGKGGFGGERGQRGG
FRGDRDGGRGFGGRGFGGRGERGGERRWDDRGDRGGFRGNRDGGRSFGGDRGERGGFNND
RGGFRGNRDGGRSFGGDRGERSGFNNDRGGFRGNRDGGRGGKGFGKSGGPRQGRGDRW
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgtctaactccgtcaacggctccgagccgacggggcgctccggcgccgcccccgagacc
gcccccctaagcctaaacgacctcttctccgcggcggtcgactccacctctcctgaggac
ttcaacagccccgtctccgctgacactcccgaggatcctgcagacctggatcacgaggag
gaggccgacgacgtcgacaccaacgcccccgagctcgatcctgaggacgagtcagaggaa
gaggaaacagacgagactgacgacgatattgacgaagaccaggtagacggacacgccgcc
ttcctggagggcgacgatgaggagcccgagccagccaagtcgtctgaagagatgaccttc
gctgatctaggcctgcctgaagacctgctgcgtgcagtcaccgacatgggcttccaaacc
cccacccccatccagcgggaggccattcccgtgctgctctccggccgcgacgtcgtcggc
gtggcccagacgggaaccggcaagactgcagccttcgggctgcccctgctggatgctgta
gacgcccgcaacggcgctgtgcaggcgctagtcctggcccccacccgtgagcttgcgttg
caaagtgccgaggccatttcggatatggctcaccgctcccgcggcctggacgtggtggct
gtctacggcggtgccccctacggcccccagatcggtgctcttaaggcaggcgcgcaggtg
gttgtgggtacgcccggccgcatcattgacttgctggagaagggcgcgctgacgctggag
gaggtcaagttcttcgtcctcgatgaggccgatgagatgctccgcatgggttttgctgag
gacgtggagacgattgcctctgacattcctggtgagcggcgcacagctctgttctccgcc
accatgcctccggcgatccaggccgtggcccgccagcacatgaccaacccggtgcatgtg
gaggtttcccgccaggcctccaccgtggacaccgtgcatcagacctacgcggtggtgcca
ttccgccacaaaatcggcgccgtagcccgcgtattggcagtgacggaggcacaggccgca
attgtctttgtgcgcaccaagtccaccgctgaggatgtagccattgagctggctggccgc
ggcattcaggccgcagctatctccggtgacgtgccacagcgcgagcgcgagcggctagtg
gagcgcctgcgggccggcacgctggatgtcctggtagccaccgatgttgccgcccgtggt
ctggatgttgaccgcattggcctagtggtgaactttgatgtgccacgcgaggccgaggcc
tacgtgcaccgtatcggccgcactggccgcgcgggccgccacggtgaggctgtcaccttc
ctcactcccaaggagaagggcaagctccgtcagatcgagcgcctcaccggcacccgcctg
gaggaaatcaccctgccttcccctgcggatgtttccgcgcatcgcgcccgcagactgttg
gagcgggtgactgctcgtctggagcgtggtcgcctggagatgtactcggagctagttgcc
gccaaggctgaggagctggaggtggaggtcactgacattgccgccaccttgctggccctg
tctgtaggtgacgagggaccgcgtacccgtgaagagcgcaagggtgagccgcgtcagcgc
gtgcgccgcgaggagaatgtggactctgagggcacctttgtctctgcttcctttgagggc
ggccgggagcgccgcgaacgtcccgaaggcaagcccggggcagctcgcggcggacgccgt
catgaggatggcttcggcaccacctaccgcttggaggttggccaccgtgaccgtgtcctg
cccggcgcgattgttggtgcgatcgccaatgaggcgggtatctctggctctgatattggc
cggatcgacatcctgcagtctttctctctggttgaggtgcacacgccgctcagccaagag
cagttggatcggctcaagcacgcgacctttggtggccgcgagttgcgcattcgtgtggac
cagggccctggccatggtggagacaatgacggcaatgctccctcagacttcgctggtgag
cgctctgggcggcctcgtggcaagggcggctttgggggcgagcgtggtcagcgcggtggt
ttccggggagaccgtgacggcgggcgcggcttcggtggccggggcttcggtggtcgcggc
gagcgcggcggtgagcggcgttgggatgaccgtggtgatcgcggtggtttccggggtaat
cgtgacggtggccgtagctttggtggcgaccgtggtgagcgcggcggtttcaacaacgac
cgcggtggtttccgtggtaaccgtgacggtggccgtagctttggtggcgaccgtggtgag
cgcagcggcttcaacaacgaccgcggtggtttccggggtaatcgcgacggcggccggggt
ggcaagggctttggcaagtccggtggcccgcggcaggggcgcggcgaccgctggtga
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