Actinomyces israelii: NCTC12972_00971
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Entry
NCTC12972_00971 CDS
T06659
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor hrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
air
Actinomyces israelii
Brite
KEGG Orthology (KO) [BR:
air00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC12972_00971 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
air03021
]
NCTC12972_00971 (hrdB)
Transcription machinery [BR:
air03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC12972_00971 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
VEG54108
LinkDB
All DBs
Position
1:complement(1102633..1104306)
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AA seq
557 aa
AA seq
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MASSTAQRKRSKAAPVDDIPEEEREDDDIDLDDDLDDDDDDLDDDLDDDDLDEDDDSDED
DEDSDDEDSDDEDDEEAEESEPEPPVEKRDYYLDVTLEENGDGTKRKPFNTPAALKGVRL
APGATLFIRSRTVVENLEISGHGTLEEPIVLAPYGHGPVPRFVLGDSAPMVARDFLTENG
YVFRGWVIKGIKMEPSIAALTGDLERIRREQAEKEAARRGGKRRKNAEKDKDGGFTVSDS
DEADEPAQKVVTAGATADPVKDYLKQIGKVALLNAAEEVELAKRIEAGMYAEHLLGTEGN
ELEARYRRELHWVAQDGQRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA
VEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLG
REPTPEELAVELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAV
SFTLLQEQLHAVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTM
SKLRHPSRSQVLRDYLD
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggcttcttccaccgctcagcggaagcgtagcaaggctgcccccgtggacgatatcccc
gaggaggagcgcgaggacgacgacatcgatctggacgatgacctcgacgacgatgacgac
gacctcgatgatgacctcgacgacgatgacctcgatgaggacgacgactctgacgaggat
gatgaggactccgatgacgaggactctgacgatgaggacgacgaggaagctgaagagtca
gagccggagccgccggtagagaagcgcgactactacctagacgtcaccctggaagagaac
ggtgacggcaccaagcgcaagccttttaacactccagcggccctcaagggtgtgcgccta
gcgcctggggcgaccctgttcatccgatcgcgcaccgtggtggagaacctggagatctcc
ggtcacggcaccctggaggagcccattgtcctggccccctacggccacggccccgtgcct
cgcttcgtgctaggcgactccgccccgatggtggcccgtgacttcctgaccgagaatggt
tatgtcttccggggttgggtcattaaaggcatcaagatggagccctccattgccgcgttg
accggtgacctggagcggatccgccgagagcaggctgagaaggaagctgcccgcaggggc
ggtaagcgccgcaagaacgccgaaaaggacaaggacggcggcttcaccgtctccgactct
gatgaggctgacgagcccgcgcagaaggtagtgaccgctggtgccaccgctgacccggtc
aaggactacctcaaacagatcggtaaagttgcgctgctcaacgccgctgaagaggttgaa
ctggctaagcgtattgaagccggcatgtacgccgagcacctcttgggcaccgaaggtaat
gagcttgaggcccgctaccgccgcgagttgcactgggtggcgcaggacggtcagcgggcc
aagaaccacctgttggaagccaacctgcgcctggttgtctccctggctaagcgctacacc
ggccgcggcatgctcttcctggatctgatccaggaaggcaacttgggcttgattcgcgcc
gtagagaagttcgactacaccaagggctttaagttctccacctacgccacctggtggatc
cgccaggccattactcgtgccatggctgaccaagcccgcaccatccgcattcccgtgcac
atggttgaggtcatcaacaaattggcccgcgtacagcgccagatgctgcaggaccttggc
cgcgaacccaccccggaagagctggctgttgagctagacatgaccccggagaaggtcatt
gaggtgcagaagtacgggcgtgagcccatctccctgcacacgccgctgggtgaggatggt
gacagtgagttcggtgacctcattgaggactccgaggcagtggtacctgccgacgccgtc
tccttcaccctgctgcaggagcagctgcatgcagtgttggacactctgtctgagcgtgaa
gctggcgttgtctccatgcgctttggcttgactgatgggcagcccaagaccctggatgag
atcggcaaggtctatggggttacccgtgagcgcatccgccagatcgagtccaagaccatg
agcaagctgcgtcacccctcgcgtagtcaggttctgcgcgactacctggactga
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