Amycolatopsis japonica: AJAP_33960
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Entry
AJAP_33960 CDS
T03225
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
aja
Amycolatopsis japonica
Pathway
aja03420
Nucleotide excision repair
aja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AJAP_33960
03430 Mismatch repair
AJAP_33960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aja03400
]
AJAP_33960
Enzymes [BR:
aja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AJAP_33960
DNA repair and recombination proteins [BR:
aja03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AJAP_33960
MMR (mismatch excision repair)
Other MMR factors
AJAP_33960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIG79600
UniProt:
A0A075V9S6
LinkDB
All DBs
Position
complement(7299203..7302460)
Genome browser
AA seq
1085 aa
AA seq
DB search
MISELQRRQVEPGEIARALGLHSPTDEQAEVIAAPIEPSLVVAGAGAGKTETMAARVVWL
VANSVVPPERVLGLTFTRKAARQLGERVRTRLRRLVGSGLLDKIDPTGDLRTTVTAGEPT
VLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQFSHRVVSTWDNDLDTDRVPSTVTAQ
LLALAGELGEHLVETERLAQYTSWLCEVIENAPRAKGQRASLPQKLAEVMTAQRFRLALL
PLVEAYHTRKRAEGALDFADQMSLAAQLASSYPAVVAGERERYGAVLLDEYQDTGHAQRI
LLRSLFGGVEHPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRDNGERLVPALDFGL
LTSFRNPPEVLELANAISEPLRERGLGVARLRALEGAGAADIAAALLPDIRAEREWVADA
VAKRWFETVEETGKPPTAAVLVRRRADMAPIAAELRARGLPVEVVGLGGLLDEPEVADLV
STLRVLADPLAGSAAARLLTGARWRIAAADLAALWRRAGELSSPVPPSGKSDVDEPVLVT
ERVEQAGLADAIDDPGTPERYSSEGYRRIRKIGAELSALRRRLDQSLPELVADVERTMLL
DVESLARPGPAGRAHLDAFADVVTDFAETSPTATLLSFVDYLNTAAHAEDGLTPGEVEVV
PDRVQVLTVHSAKGLEWRIVAIPHLVKEVFPGRRRSSSWLRTSTSLPAALRGDSEDLPEL
RIPEGADRKEVQEALELHEEGFVAREADEERRLCYVALTRSEHTMLISGHWWNESSARPK
GPSEFLLEIGEVMRGNSVGRIEPWADEPETDGENPLVADARRSRWPVDPLWPRREGVTNG
VDMVLGAMEDAEHAEEEEEDDPDGWISDTKVLLEERARARDRVQQVVLPPHLSVSQLVEL
SADPAALAKRLRRPLPVRPNTYARRGTAFHGWLEQRFGGEQLLEIHDLPGAADVDEAPDT
ELEALQTAFEKSEWAHRVPHAVEVPFSADVVGVTVRGRMDAVFADADGGWTVVDWKTGAV
PEADRVESLAVQLAAYRLAWAALKNIPVEKVRAAFHYVKHDKTVRPADLLDAEGLRRLLR
SVPTI
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
ttgatctccgaactccagcgccgccaggtcgaaccgggcgagatcgcccgcgcgctcggc
ctgcacagccccaccgacgagcaggccgaggtcatcgcggcacccatcgagccgtcgctg
gtcgtcgcgggcgcgggcgcgggcaagaccgagacgatggccgcgcgcgtcgtctggctg
gtggccaacagtgtcgtgccgccggaacgcgtgctcggcctgaccttcacccgcaaggcc
gcccgtcagctcggcgaacgcgtccgcacccggctgcggcggctcgtgggatcgggactg
ctcgacaagatcgacccgaccggtgatctgcgcacgacggtgaccgccggcgagccgacg
gtgctgacctatcacgcgtatgccgggcggctgctgtccgaacacggcctgcggctgccc
gtccagcccggcgtccggctgctgtcggagacgtcttcgtggcagttctcgcatcgcgtc
gtgtccacttgggacaatgacctcgacaccgatcgcgtgccctcgacggtgacggcgcag
ttgctggcgctggccggggaactcggcgaacacctcgtcgagaccgaacggctggcgcag
tacacgtcttggctgtgcgaggtcatcgagaacgcgccgagggcgaaagggcagcgtgct
tctctgccgcagaagctggccgaagtcatgacggcgcaacggttccgcctcgcgctcctg
ccgctggtcgaggcgtatcacacacggaaacgagcggaaggcgcgctcgacttcgccgac
cagatgtcgctggccgcgcagctcgccagcagctatccggcggtggtcgcgggggagcgc
gaacgctacggcgccgtcctgctcgacgagtaccaggacaccgggcacgcccagcggatc
ctgctgcgttcgctgttcggcggggtggaacatccgccgatgccggtgaccgcggtcggc
gatccggcgcaggccatctacggctggcgcggcgcgagcgcggcgaacctgccccggttc
accacggacttcccgcgtgacaacggcgagcggctcgttccggccctggatttcgggctg
ctgaccagcttccgcaatccgcccgaggtgctcgaactcgcgaacgcgatctcggagccg
ctgcgggaacgcggcctcggtgtcgcgcggctgcgcgcgctggagggcgcgggggccgcc
gacatcgccgccgcgctgctgccggacatccgcgccgaacgcgagtgggtggccgacgcg
gtggcgaaacgctggttcgaaaccgtggaggagaccggaaagccaccgaccgcggcggtt
ctggtgcgtcgtcgtgccgacatggcgccgatcgcggcggagctgcgagcgcgtgggctt
ccggtggaggtcgtcggtctcggcggcctcctcgacgaacccgaggtcgcggatctggtg
agcacgttgcgagtgctcgccgatccgctcgcgggcagcgctgccgcccggctgctgacc
ggggcgcgctggcggatcgcggcggccgacctcgcggcgttgtggcgccgggccggtgaa
ctctcgtcgccggtgccgccgtcggggaagtccgatgtggacgaaccggtgctggtgacc
gagcgggtcgagcaggcgggactcgccgatgccatcgacgatcccgggacgccggaacgc
tattcgtccgagggataccggcgtatccggaagatcggcgccgagctttcggcgttgcga
cggcggctcgaccaatcgctgcccgaactggtcgccgacgtggaacgcacgatgctgctc
gacgtcgagtcgctggcccgtcccggcccggccgggcgcgcgcacctggacgctttcgcc
gacgtcgtcacggatttcgccgagacctcgccgacggccacgcttttgtcctttgtggac
tatctgaacacggccgcgcacgcggaagacgggctcacccccggtgaagtggaggtggtc
ccggatcgggtccaggtactgacggtgcattcggccaaggggctggaatggcgcatcgtc
gcgattccgcatctggtcaaggaggtcttccccgggcggcggcgttcgtcatcgtggctg
cggacgtcgacctcgctgcccgccgcgctgcgcggggactcggaggatctgccggagctg
cggatccccgaaggcgcggaccgcaaggaagtccaggaagcgctggaactgcacgaagaa
ggcttcgtcgcgcgggaagcggatgaagagcggcggctctgctacgtcgcgctgacccgc
tccgagcacaccatgctgatctccggccattggtggaacgagagcagcgcgcggccgaag
gggccgtcggagttcttgctggaaatcggcgaggtgatgcggggcaactcggtcggccgc
atcgagccctgggccgacgagcccgagaccgacggcgagaacccgctggtcgccgacgcc
cgccggtcgcggtggccggtcgatccgctgtggccgcggcgcgagggcgtcacgaacggc
gtcgacatggtgctcggggcgatggaggacgccgagcatgcggaagaggaggaagaggac
gatccggacggctggatctccgacaccaaggtgctgctggaggagcgggcgcgggcgcgg
gaccgggtgcagcaggtcgtcctgccgccgcatctctcggtgagccagctggtcgagctg
tcggccgatcccgcggcgctggccaaacggctgcggcggccgcttcccgtacgccccaac
acgtacgcgcggcgagggacggcgttccacggctggctggagcagcggttcggcggcgag
cagttgctggagatccacgacctgccgggggcggcggacgtcgacgaggcgcccgacacc
gaactggaagcgctgcagaccgcgttcgagaagagcgagtgggcgcaccgggtgccgcac
gcggtcgaggtgccgttctcggcggacgtcgtgggcgtgacggtgcgcgggcggatggac
gcggtgttcgccgacgcggacggcggctggaccgtcgtcgactggaagaccggtgccgtt
ccggaagccgaccgggtcgagtcgctggccgtgcagctggcggcgtaccggctggcctgg
gcggcgttgaagaacatccccgtggagaaggtacgggcggcgttccactacgtgaaacac
gacaagaccgtccgcccggcggatctgctggacgccgaaggactacgccggctcctgcga
agcgtcccgacgatctaa
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