Artibeus jamaicensis (Jamaican fruit-eating bat): 119044321
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Entry
119044321 CDS
T07223
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ajm
Artibeus jamaicensis (Jamaican fruit-eating bat)
Pathway
ajm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ajm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119044321 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajm03021
]
119044321 (PCF11)
03019 Messenger RNA biogenesis [BR:
ajm03019
]
119044321 (PCF11)
Transcription machinery [BR:
ajm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119044321 (PCF11)
Messenger RNA biogenesis [BR:
ajm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119044321 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
119044321
NCBI-ProteinID:
XP_036994483
LinkDB
All DBs
Position
Unknown
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPMVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKTPHQVPMQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLMNPLSQSDIKTSKTIPSEKLNSSKQEKSKSGEKTKKELDQL
DSKSKSKSKSPSPLKNKLSHIKDLKNQESECPRVSDMSKRDPRLKKHLQDKTDNKDDDTK
EKRKTAEKKDKDEHMKSSEHRLVGSRNKIVNGIVQKQDTITDESEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLTPKPGKIRQSGCKQSHMEEFMPPSRE
ERNAKRSTKQDVRDPRRMKKTEEERPQETANQHSTKSGTEPKENVENWQSSKSTKRWKSG
WEENKSIQQNDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASK
RELLQKTSERLASGEITQDEFLLVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKPL
LSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRN
SGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSTKGVREEQRSPFNDR
FPLKRPRYDDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIF
EGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQSQLGGGCPLRFEGPPGPVGT
PLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGSLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGGLRFDNPRGQPIGGLRFEGGHGPSGPAIRFDGPHGQPAGGIRFEGPLLQQ
GVGMRFDGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PVPGGGLRIEGPLGQGGPRFDGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGP
QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLESVSFNQT
GPYNDPPGNAFSAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDE
KNLQSSQFGNFGNLPAPITVGNIQGSQQVLTGVAQAVPFGQGQQFLPVHPQNLGAFVQNP
SGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSTTTQVNEVAVQPSTEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQDPSESPKVKEEQIDTPPACTEESIATPTEIKTENDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcccgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaagttacgttcc
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaatggtacctgatatacaaaagaatcttacccaa
gagcaactaataaggcaacagttactggcaaaacaaaaacagttattagaacttcagcag
aaaaagctggagcttgaactagagcaagctaaagcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgtttcacaa
attcctcctatggcagttaaaactccccatcaggttcctatgcagcctgagaaaagccgt
ccaggtccatccttacaaattcaggacttgaaaggaacaaaccgggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcaaagtcacagaaaagaattcctgatg
aacccattaagccaatctgatattaaaacaagtaaaactataccctctgaaaaactaaat
tcatccaaacaagaaaaaagtaaatcaggtgaaaaaaccaagaaagaacttgaccaatta
gattctaaatcgaaatcgaaatcgaaatcaccatcacctttgaaaaacaaattatctcac
ataaaagacttgaaaaatcaagaatctgaatgcccaagggtgtctgatatgagcaagaga
gatccaagattaaaaaaacacctccaggataagactgataacaaagatgatgatacaaaa
gagaagagaaaaactgcagaaaaaaaggataaagatgagcatatgaaatcatctgaacac
agactggttggaagtagaaataaaattgttaatggcattgtacaaaaacaggatacaata
acagacgaatcagaaaaacagggaacaaaaccagggagatcaagtactagaaagcgatca
agatctcgatcacccaagtctcggtcaccaattatacattctcctaagagaagagacagg
cggtcacccaaacgaaggcaacggagtatgtctccaaccttgacacccaaacctggaaag
attcgccagtcgggatgtaagcagtcacatatggaagaatttatgccaccttccagggaa
gaaagaaatgctaagagaagtactaaacaggatgttcgagatccaagacgaatgaaaaag
actgaagaggaacgaccacaagaaactgcaaatcagcattctacaaaatcaggcactgaa
ccaaaagagaatgtagaaaattggcaaagttccaaatctaccaaaagatggaaatctggt
tgggaagaaaataaaagcatacaacagaatgatgaacatagtaaatctcctcatctaaga
catagagaaagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcagcag
catcgattaagtgtagatgccaatcttcagattcccaaagagttaactcttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttcttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacataga
tgcaatgtacgcgatagtcctacagaagaaaataaaggtggattaaaaaagaaacctctc
ttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggtt
cagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgact
gatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaat
agtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcct
atttctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaagacat
gacgagcaagtctctactaaaggtgtacgagaagagcagagatcaccattcaatgatcgt
tttccacttaagcgacctagatatgacgattcagataaaccatttgtagatagcccagca
tcacgatttgccggccttgatacaaatcagcgacttacagctttagctgaagacagacca
ttatttgatggacctagtaggccatcagtaaccagagatggcccaaccaagatgattttt
gaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctcttcgg
tttgatgggtcacctggacagatggggggaggtggccctttgagatttgaaggaccacaa
agtcagctaggaggcgggtgtcctttgagatttgaaggtcctccaggaccagtagggaca
cctttgcggtttgaggggccaattggtcaagcaggtggaggtggttttcggtttgaaggt
tcccctggtctgagatttgagggatctgcaggtagtctaagatttgaaggaccagggggc
cagcctgtgggtggtctcaggtttgagggacatcggggtcaacctgtgggtggtctaagg
tttgagggacctcatggtcagcctgtgggtgggcttagatttgataatccccgaggtcag
cctataggtggacttagatttgaggggggtcatgggccatcaggacctgcaattagattt
gatggacctcatggtcagccagcaggtgggatcagatttgagggtcctttgctacagcag
ggagttggcatgaggtttgatggcccccatggtcagtcagtagctggtctgaggtttgaa
ggacaacataatcaacttggtgggaaccttaggtttgagggtccacatggtcaaccagga
gttgggatcaggtttgagggacctttagtccaacaaggaggtggaatgaggtttgagggt
cctgtgccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtccaagattt
gatggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttaccaaga
tttgatggactacatggtcaaccaggtcctagatttgaaaggactggtcagccaggccca
cagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgtgcctcaa
agatttgatggtccacagcaccagcaggcatcaaggtttgatattccccttggtcttcaa
ggcgcacgatttgacaatcatccttcacaaaggcttgaatcagtttctttcaaccagact
ggtccatataacgatccacctggcaatgcttttagtgccccgtcccaaggactgcagttc
caaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacatggc
cctggaaaccagagtttctccaatcctcttaacagagcttctggacactattttgatgaa
aaaaatcttcagagttctcaatttggaaattttggcaatttacctgctccaataaccgta
ggaaatattcagggatctcaacaggttctgactggcgttgctcaagcagtaccgtttggc
caaggacaacagtttttaccggttcatccacaaaatcttggagcatttgttcagaatcct
tcaggagcccttcctaaggcataccctgataatcatctcagtcaggtggatgtaaatgaa
ttattttcaaaactgcttaaaacaggaattctcaaattgtcccagcctgattcaactaca
acacaagtaaatgaagttgctgttcagccttccactgaagaggaggaagatcaaaatgaa
gatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgttatgat
agtgttataaatcgactgtacactggtattcagtgttactcctgtggaatgagatttaca
acatcacagacagatgtgtatgcagatcacttggactggcattatcggcaaaataggact
gaaaaagacgttagcagaaaagtcactcatagacgctggtactacagtttaacagactgg
atagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagttttttgaaaag
gtgcatgaagaagttgtgctcaaaactcaggaagctgctaaggaaaaggagttccagagt
gtacctgcagggccagctggagcagttgagagttgtgaaatctgtcaagaacaatttgaa
caatactgggatgaagaggaggaggaatggcatttaaaaaatgctattagagtagatgga
aagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aatgaattgcaggatccctctgaaagccccaaagttaaggaagaacaaatcgatacccca
ccagcttgtacagaggaaagcatagcaacacccactgaaattaaaacagaaaatgataca
gttgagtcagtttaa
DBGET
integrated database retrieval system
