Artibeus jamaicensis (Jamaican fruit-eating bat): 119045916
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Entry
119045916 CDS
T07223
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ajm
Artibeus jamaicensis (Jamaican fruit-eating bat)
Pathway
ajm03030
DNA replication
ajm03410
Base excision repair
ajm03420
Nucleotide excision repair
ajm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119045916 (LIG1)
03410 Base excision repair
119045916 (LIG1)
03420 Nucleotide excision repair
119045916 (LIG1)
03430 Mismatch repair
119045916 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajm03032
]
119045916 (LIG1)
03400 DNA repair and recombination proteins [BR:
ajm03400
]
119045916 (LIG1)
Enzymes [BR:
ajm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119045916 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
119045916 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119045916 (LIG1)
DNA replication proteins [BR:
ajm03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119045916 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119045916 (LIG1)
DNA repair and recombination proteins [BR:
ajm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119045916 (LIG1)
NER (nucleotide excision repair)
Other NER factors
119045916 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
119045916 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
119045916
NCBI-ProteinID:
XP_036996699
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MQRTIMSFFQPKKEGKAKKPEEASDSIREMDPPPKVALKERNRAVPESESPVKRPGRRAA
RVLCSEGEEEDEAVTNPKGQKPATDSPPASSPSPVTVPESSPSLSSTSGPLMSLSGIPKR
ITARKQLSTRTIQEIVDDHNRRMELERKRKREEEEAESLGEHLSEPEGAKEKEADEEGPL
MTSSEPQDTCTEAPPESSSDPEAQDEDPAKPPPRAPKTLSSFFTPRKPAGKKEVKEAKPG
TPRKEEPQGLAHSDVSSSPLDPGSYNPAKNSYHPVQDACWKQGQKVPYLAVARTFEKIEE
VSARLRMVETLSNLLRSVVALSPPDLLPILYLSLNCLGPPQQGLELGVGDGVLLKAVAQA
TGRQLESVRAEAAEKGDVGLVAESSRSTQRLMLPPPALTASGVFARFRDIARLTGSASTA
KKIDIIKGLFVACRHSEARYIARALSGQLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVV
DAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEQGLERLPEHCRLSPGVPLK
PMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHFLEGGEVKIFSRNQEDNTGKYPDI
ISRIPKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFD
LIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDMDQIAEFLEQSVKDSCEG
LMVKTLDVHATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA
CYDAESEELHAICKLGTGFSDEELEIHHRALQVLVLPTPRSYVRADGAVAPDHWLEPRVV
WEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFLRVRVDKKPETATTSAQVACLYRKQS
QIQNQQGGDADSDPEDFY
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaactatcatgtcattttttcaacccaagaaagagggcaaagcaaagaagcca
gaggaggcatccgacagcatccgagagatggacccccctccaaaggtggcgctgaaggag
cggaacagagcggtgccggagagcgagtctccagtgaagaggccggggcggagggcagcc
cgggtcctgtgcagcgaaggggaggaggaggacgaagccgtcacgaaccccaaaggccag
aagcctgctaccgattccccaccagcctcctcccccagtcccgtcacggttcctgagagc
agcccttccctctccagcacgtctggaccgctcatgtccctgtcgggcatcccgaagcgt
atcacagctcggaagcagctttctacacggacgattcaggagatcgtagacgaccacaac
aggaggatggaactcgagagaaagaggaagagggaggaagaagaagcagagagcctggga
gaacatctctcagagccagaaggggccaaagagaaggaagcagatgaggagggcccgctg
atgacttcctctgagccccaggacacctgcacagaggccccaccagagagcagttcggac
cccgaggcccaggacgaggacccggcgaagccgccccccagagctcccaagacgctcagc
agtttcttcaccccccggaagcctgcaggcaaaaaggaagtgaaggaagccaagcctggc
accccaagaaaggaggagccccagggacttgcccactcggatgtgagctccagcccgctg
gacccaggcagctacaaccctgccaagaacagctaccaccccgtgcaggacgcctgctgg
aagcagggccagaaggtcccttatctggccgtggcccggacattcgagaagatcgaggag
gtttctgctcggctccggatggtggagacgctgagcaacttgcttcgctctgtggtggcc
ctgtcccctccagaccttctccccatcctctacctcagtctcaactgcctcgggccaccc
cagcagggcctggagcttggcgtcggggacggtgtccttctcaaggcagtggcccaggcc
acagggcggcagcttgagtctgtccgggctgaggcagccgagaagggcgacgtggggctg
gtggccgagagcagccgtagcacccagaggctcatgctgcccccgcccgccctcaccgcc
tccggggtcttcgccaggttccgggacatcgcccggctcactggcagcgcttccacagcc
aagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccggtac
atcgccagagccctgagtggacagctgcgcctcgggctggcggagcagtcggtgctggcc
gccctcgcccaggccgtgagcctcacgcccccaggccaagaattccccccggccgtggtg
gacgctgggaagggcaagacagccgaggccagaaagacctggctggaggagcagggcatg
attctgaagcagacgttctgtgaggtgcccgacctggaccggatcgtcccggtgctgctg
gagcagggcctggagcggctgccagagcactgccggctgagtccaggggtccccctgaaa
ccgatgttggcccaccccacccggggcgtcagcgaggtcctgaaacgcttcgaggaggcc
gccttcacctgcgagtacaaatacgacgggcagagggcccagatccatttcctggagggc
ggggaggtgaagatcttcagcaggaaccaggaagacaacaccggaaagtaccccgacatc
attagccgcatccccaagataaaactcccatcagtcacgtctttcattctggatgcagag
gcggtggcttgggaccgggaaaagaaacagatccagccattccaagtgctcaccacccgc
aaacgcaaggaggtggacgccgcggagatccaggtgcaggtgtgtctgtacgcctttgat
ctcatctacctcaacggagagtccctggtacgggagcccctctcccgacgccggcagctg
ctccgggagaacttcgtggagacagagggcgagttcgtcttcgccacgtccctggacacc
aaggacatggaccagatcgccgagttcttggagcagtcggtgaaggactcctgcgagggg
ctgatggtgaagaccctggatgttcacgccacctacgagatcgccaagaggtcgcacaac
tggctcaagctgaagaaggactacctggacggcgtgggtgacaccctggatctcgtggtg
atcggcgcctacctgggccgggggaagcgagccggccgctacgggggcttcctgctggcc
tgctatgacgcggagagcgaggagctgcacgccatatgcaagctgggcaccggcttcagt
gacgaggagctggagatacaccaccgggccctccaggtcctggtgctgcccaccccacgc
tcctacgtccgggcagacggtgctgtggcccccgaccactggctggagccccgagtcgtg
tgggaggtcaagtgcgccgatctctccctctcccccatctaccctgcagcccgggggctg
gtggacagcgagaagggcatctcccttcgcttccctcggtttcttcgcgtccgtgtagac
aagaagccggagacggccaccaccagtgcccaggtggcctgtctgtacaggaagcagagt
cagatccagaaccagcagggtggggacgcagactccgacccggaggacttctactag
DBGET
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