Artibeus jamaicensis (Jamaican fruit-eating bat): 119046853
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Entry
119046853 CDS
T07223
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ajm
Artibeus jamaicensis (Jamaican fruit-eating bat)
Pathway
ajm03013
Nucleocytoplasmic transport
ajm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ajm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119046853 (UPF1)
03015 mRNA surveillance pathway
119046853 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajm03019
]
119046853 (UPF1)
Enzymes [BR:
ajm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119046853 (UPF1)
5.6.2.5 RNA 5'-3' helicase
119046853 (UPF1)
Messenger RNA biogenesis [BR:
ajm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119046853 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
119046853 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119046853
NCBI-ProteinID:
XP_036997994
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGSGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtatgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagcttctcggcgccgacacgcagggctcggagttcgagttcaccgacttcactcta
cccagccagacacagactcctcccggaggccccggtggccccggaggtggcggcccaggg
gtccctgtcggctcgggtgcgggcgctgcggccggacagctcgacgcccaggttggagga
cctgagggcatcctgcagaatggggctgtggatgacagcgtggccaagaccagccagttg
ctggccgagttgaacttcgaagaggatgaagaggatacctattacacgaaggacctacca
gtacatgcctgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggggagacg
gtcctggagtgttacaactgtggctgccgcaacgtcttcctcctcggcttcatccctgcc
aaggccgactcggtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggatcgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagctgcgggcccggcagattactgcc
cagcagatcaacaaacttgaggagctgtggaaggagaatccttctgccacattggaggat
ctggagaagccgggggtggacgaggagccgcagcacgttctcctgcggtatgaggatgcc
taccagtaccagaacatatttgggcctctggtcaagctggaggccgactatgacaagaag
ctgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggggatgagatatgcctgcggtacaaaggg
gatctggcacccctgtggaaagggatcggccacgtcatcaaggtccctgacaattatggt
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacacataac
ttccaggtggattttgtgtggaagtccacctcatttgacaggatgcagagtgcactgaag
acctttgctgtggatgagacctccgtgtcgggctatatctaccacaaactgctcggtcac
gaggtggaggatgtgatcatcaagtgccagctgcccaagcgcttcacagcacaggggctg
cctgacctcaaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagc
ctgatccagggaccaccaggaacagggaagactgtgacctcggccaccattgtctaccat
ctggcacggcagggcaacgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagacaggactgaaagtcgttcgactctgcgctaagagc
cgtgaggccattgattccccggtgtcattcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctccagaagctgcagcagctcaaagacgagactggggagctgtca
tctgctgatgagaagcgataccgagccctgaagcgcacagctgaaagggagctgctcatg
aatgcagatgtcatctgctgcacatgtgtgggtgcaggagaccccaggctcgccaagatg
cagttccgctccattctaattgacgagagcacccaggccacagagccagagtgcatggtc
cccgtggtccttggagctaagcagctgatcctcgtgggcgaccactgccagctgggccct
gtggtgatgtgcaagaaggcagccaaggcagggctgtctcagtcgctgtttgaacgcctg
gtggtgctgggcattcgtccaatccgcctgcaagtccagtatcggatgcaccctgcgctc
agtgccttcccatccaacatcttctatgagggctctctgcagaatggtgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccaatgttcttc
tatgtgacccagggccaggaagagatagccagctcgggtacctcctacctgaacaggacg
gaggctgcaaacgtggagaagatcaccacgaagctgctgaaggcaggcgccaagccagac
cagattggcatcatcacgccttatgagggccagcggtcctacctggtacaatacatgcag
ttcagtggctccctgcacaccaagctgtaccaggaggtggagattgccagtgtggatgcg
ttccaggggcgtgagaaggacttcatcatcctctcctgtgtgagagccaacgagcaccaa
ggcatcgggtttttaaatgaccccaggcggcttaacgtggctctgacccgagcgagatat
ggggtcatcattgtaggcaaccccaaggctctgtccaagcaaccactgtggaaccacctg
ctgaattactataaggagcagaaagtgctggtggaggggcccctgaacaacctgcgggag
agtctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgactacagccatgtatgatgcccgggaggccatcatcccagggtcagtctatgac
cggagcagccagggccggccctcgaacatgtacttccagacccatgaccagctcggcatg
atcagtgccggccccagccacgtggccgccatgaacattcccatccccttcaacctggtc
atgccaccaatgccgcccccagggtactttgggcaggctaatgggccagcggcaggtcgg
ggcaccccaaaaggtaagacgggtcgtggcggacgtcagaagaaccggtttgggctccct
gggcctagccagacgaacctgcccagcagccaggccagccaggacgtggcatcgcagccc
ttctctcagggtgccctgacgcagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagcctgagctgtcccaggacagttaccttggtgatgagtttaag
tcccagattgatgtggcgctgtctcaagactctacgtaccagggggagcgggcataccag
catggtggagtgacggggctgtcccagtattag
DBGET
integrated database retrieval system