Acinetobacter junii: BVL33_11845
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Entry
BVL33_11845 CDS
T04674
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ajn
Acinetobacter junii
Pathway
ajn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ajn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BVL33_11845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajn03400
]
BVL33_11845
Enzymes [BR:
ajn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BVL33_11845
DNA repair and recombination proteins [BR:
ajn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BVL33_11845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APU49138
LinkDB
All DBs
Position
complement(2423132..2426593)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQFKAGEKRWIGSLLGSSAALLFKEIATQNSNLYVIVARNNQHLAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGILLISASTLAQRVAPY
SWVVGEHFDIKVGQKLDLEAQKKQLVQAGYRLVDTVYDHGEFAVRGSIMDIYASGQDQPI
RIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRSTFRDRYAESFPTANPK
KNPIYQDVLEGIATPGLEFYFPLFFDKKLMEAQSMLTAYLPKNCVVITNSEVEDELISFW
KEVVRRYEDRRHNIDQPILPPEDLFLMPNHVLQALNQFPRILASADTFDEKAGVLNLSAE
QPPKLAVDPKKEQPFQAVKNYIDQIKFPVLLVAESAGRRETLKDALRSVLGEIQTVDSFA
QFQKDKLKVAITSAPLDRGLLLTDQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLVTLEIDQQDHEFLQLDYADGAKVYVPVTNLHLISRYSGG
DPNLAPLHKLGTDTWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDHTAYMQFAS
GFAYEETLDQANAIESTLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADTAVRIEVLSRFGSNKTHLKIIEDLADGKVDIVVGTHKILQ
ENVQFKNLGLMIVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDSVKEAILRELLRGGQVYFLHNEVDTIERAAESIRTLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSLKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQAVKQLFSVHQVRLKAEQLGI
TKVDVNTNGGYIEFSPDTPVQAISIIQLMQKNPTHYRMEGGQRLKLTVHLSEYEERIKFI
VTLLNKLLSELNG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattaaacttacaacaattcaaagctggcgaaaaacgc
tggattggttcgcttcttgggtcatctgctgcactactattcaaagaaattgccactcag
aattctaatttatatgtaattgttgcacgaaataatcaacatcttgcacagcttgaaagt
gagcttgaattttatggcataaaaccaacaatctttcctgactgggaaattttgccatat
gatcgcttatctccgcaccaagatatcgtctccgagcgtttggctattttatctaatatg
ccacaaaaggggattttattaatttctgctagtactttggctcaacgtgttgcaccttac
tcatgggttgttggtgagcattttgatattaaagttggtcaaaaacttgatttagaagca
cagaaaaaacaattagtccaagcaggctatcgcttagttgatactgtttatgatcatggt
gagtttgcagttcgtggcagcattatggatatatatgcatcaggacaagatcaacctatt
cgtatcgacttatttgatgatgaaattgaaagcctgaagtttttcgatcctgaaactcaa
agaacaacggaatcattaaagaattttactgtattacctgctaaagagtttcctctcaaa
gaaggtagatcaacattccgagatcgctatgcggaaagtttccctaccgcaaatcccaag
aaaaatcctatttatcaagatgtactcgaaggaatagcaacaccaggcttagagttttat
tttcctttattttttgataaaaagttaatggaagcgcaaagtatgttaacggcatactta
ccaaagaattgtgttgtcattacaaatagtgaagttgaagatgaattaattagtttttgg
aaggaagttgttcgtcgttacgaagatcgtcgtcacaatattgatcaaccgatccttcct
cctgaagatctatttttaatgcctaatcatgttttacaggcattaaatcaatttccaaga
attcttgcttcggcagatactttcgacgagaaagctggtgttctaaatttatcagcagag
caacctccaaaactcgctgtagatcctaaaaaagagcagccttttcaagctgtcaaaaac
tatatcgatcaaattaaatttcctgtgcttttagtcgctgaaagtgcaggacgacgcgaa
actttaaaagatgcgctgcgctcagttttaggagaaattcaaacagtcgatagctttgct
caattccaaaaggataagctaaaagttgcgattaccagtgctcctttagaccgtggttta
cttctcacagatcaattatcagttatatctgaaaatcaactttacgaacacagagttgtt
caacgtagaagaaaacgtcagcaagaagtctccgaagagtttttaattcggagtctaacc
gaactgagtataggtgcgcctgtcgtacatattgatcatggcgttggacgttatgcggga
ttagttaccttagagattgatcagcaagaccatgagtttttacaacttgattatgctgat
ggggctaaggtctatgttcctgtcaccaatttacatttgattagtcgctatagtggtgga
gatcctaatcttgcgcctttgcacaagttgggtacagatacatggagtaaagctaagcgc
aaagctttagagcaaattcatgatgtagcggctgagttattgcatattcaagctcgtcgg
caatcaaaaccaggttttgcgtttgagctagatcacacggcatatatgcaatttgcaagt
ggcttcgcttatgaggagacactagaccaagccaatgcgattgaatcaactcttcatgac
atgcaacttgcgaaacctatggatcgtttggtttgtggtgatgttggttttggaaaaact
gaagttgcaatgcgagcagcctttgtggcagtacaaaacaataagcaagtcgcagttttg
gtgccgacgactttacttgcacaacagcattatgagtcattcaaagatcgctttgcggat
acagcagttcgtatcgaagttttatcacgtttcggaagcaacaaaacgcatctaaaaatc
attgaagatttggctgatggcaaagttgatatcgtggtcggaacccataagattttgcaa
gaaaatgtacagtttaaaaatttaggtttaatgatcgtcgatgaagaacatcgttttggt
gtgcgcgataaagagcgtatcaaagcacttcgtgccgatgtggatatgcttacgctcaca
gcaaccccaattcctcgtaccttgaatatggcattctctggaatgcgtgatttatctatt
attgcgacgccaccagcacgccgtttagccgtaaaaacttttgttcaagagcatacggat
gactctgtgaaagaggcaattctgcgtgaattattgcgtggtggacaagtctacttctta
cataatgaagtcgatacaatagaacgagctgcagaaagtattcgaaccttggttccagaa
gctcgtgtagcggttgctcatggacaaatgcgtgaacgtgaattggaacaagtgatgcag
cagttctatcacaaagaatataacgtactggtatgctctacgattatagaaacgggtatt
gatgtaccgaatgccaatacaatcattatagaacgtgccgataaactaggtttggcccag
ttgcatcaacttcgcggtcgtgttgggcgttcacatcaccaagcctatgcttatttgctc
gtaccatcactcaaacatttgaaaggtgacgctgaaaaacgtttagatgcaattcaaaga
gcttcaacacttggtgctggttttatgctggcgacagaagatttagagattcgcggtgct
ggtgagctcttaggtgagcagcaaagtggttcaatgcaagcaattggctacagcttgtat
atggagatgcttgaaaaggcaaccaaggcgattcaaaaaggtaaaactcctaatttcgat
gctccgctttcacttactgctgaaattaacttacatatgccagcattgattccagatgat
tatttgggcgatgttcatcaacgcttattgttctacaagcgtattagtaatacagacaca
caagagaaactggataatatccgaatggagttgattgaccgttttggtattccacctcaa
gcagttaaacagttgttcagcgttcatcaagtgcgtcttaaagcggaacaacttggaatt
acaaaagtcgatgtgaatacaaacggtgggtatatcgagttttctcctgatacacctgta
caagcaatcagtatcattcagttgatgcagaagaacccaactcactatcgtatggaaggt
ggtcagcgattgaaattgacagttcacttgtcagaatacgaagagcgtatcaagtttatt
gtgaccttgctgaacaagttattaagtgagttgaatggctaa
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