Acinetobacter johnsonii: RZ95_07970
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Entry
RZ95_07970 CDS
T04178
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ajo
Acinetobacter johnsonii
Pathway
ajo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ajo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RZ95_07970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajo03400
]
RZ95_07970
Enzymes [BR:
ajo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RZ95_07970
DNA repair and recombination proteins [BR:
ajo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RZ95_07970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
UB2H
CbiX
Motif
Other DBs
NCBI-ProteinID:
ALV74466
UniProt:
A0A0U3RVZ8
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All DBs
Position
1624758..1628216
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQEEISQLNVQQLKAGEKRWLGNLLGSSAALFIQTLSTQNKKLFVIVAKNNQHLAQLES
EFEFYGIRPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQTGVLLISASTLAQRVAPT
SWVLGEHFDIHVGQKFELEQQKKRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQAAPI
RIDLFDDEIETLKFFDPETQRTTQNLKQFSVLPAKEFPLKEARSIFRDRYAEMFPTANPK
KNPIYQDVLEGIASPGIEFYFPLFFSAAQMEAQSTLLSYLPNHSIVITDRQVDDGLDSFW
KEIDRRYEDRRHNVDQPILAPNQLFISTNQVLEQLNTFPRIIASVEAFDLKAGVTNLNTE
LPPRLAVDPKNEKPFHAVKQYIDAANHPVLLVAESAGRRETLKDALRATLGEIPNVENFA
EFQKSLHAIAITSAPLERGLVLKDSISIISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSMGAPVVHIDYGVGRYAGLVTLSIDDQDYEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQAKPGFGFELDQGQYMQFAS
GFAYEETLDQANAIEATLYDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSSKSHTKTIEDLAEGKVDIVIGTHKILQ
ESVQFKDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTGDSVKEAILRELLRGGQVYFLHNEVETIERAAETLRELVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDE
YLGDVHQRLLFYKRISNTDGQEKLDNIRMELIDRFGIPPQPVKQLFAVHQMRLKAETLGI
TKVDIAANGGAIEFSPDTPVQAISIIQMMQKHPTSFRMEGGQRLKVMVMLEEYEKRIQFI
NDLLESLLKELH
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagaagaaatctcccaactgaatgtgcaacaactaaaagcaggcgaaaaacgt
tggctgggaaatttgctcggctcttcagctgcattattcattcaaacgttaagcacacaa
aataaaaagctctttgtgattgtggcaaaaaacaatcaacacttagcacaactcgaaagt
gaatttgaattttacggtattcgaccgaccattttcccagactgggaaattctgccttat
gaccgtttatctcctcatcaagatattgtatctgagcgtctcgcaattttatccaatatg
ccgcaaacaggcgtcttactgatttcggcttcgaccttggcgcagcgtgtagcgccgact
tcgtgggttttgggagaacactttgatattcacgtcggtcaaaagtttgaattagaacag
caaaagaagcgtttgattcaagcaggctatcatttggtcgacacagtatatgaccatggt
gaatttgcggttcggggtagcattatggatatctatgcctcaggtcaagctgcaccaatt
cgcatagatttgtttgatgatgaaattgaaacccttaaattttttgatcctgaaacacag
cgcactacgcaaaacttaaaacagttttccgtattaccagctaaagagtttcctttaaaa
gaggcacgcagcatatttcgtgatcgctatgcagaaatgtttccgacggcaaatccaaag
aaaaatccaatttatcaggatgtgttagaagggattgcctcaccagggattgagttctat
ttcccactatttttcagtgctgcgcagatggaagctcaaagcacactgctttcatactta
ccaaatcattccattgtcattacagataggcaagttgatgatggtttagatagtttttgg
aaagaaatcgatcgacgttatgaagaccgtcgccataatgttgatcagccaattttagcc
cctaaccagctttttatttcgaccaatcaagttttagaacagctcaatacctttccacgt
attattgcctcagtcgaggcttttgatctaaaagcgggtgtgaccaatttaaatactgaa
cttccaccacgtttagcagtcgatcctaaaaatgaaaagccctttcatgctgttaaacag
tatattgatgctgctaaccatccagtattactggttgctgaaagtgcggggcgtcgtgaa
actttaaaagatgcattgcgcgccacattgggagagattcctaatgtcgagaattttgct
gaatttcaaaaatctttacatgccattgcaattaccagtgcgcccttagagcgtggcttg
gtattaaaagacagcattagcatcatttctgaaaatcagttgtatgagcatcgcgttgta
cagcgccgtcgtaaacgccagcaagaggtttcggaagagtttctcatccgcagtttgact
gagttgagtatgggtgcgccggtggtgcacatcgactatggtgtggggcgttatgcgggc
ttagtcactttaagcattgatgatcaagactatgagttcttgcagcttgattatgccgat
gccgccaaagtttatgttcctgtcaccaatttacatttgatcagccgttatagcggcggc
gacccagacttagcacccttgcataagttgggtacagatgcttggagtaaagcaaagcgt
aaagcattggagcaaatccatgatgtagcagcggagctattgcatatccaagcccgtcgc
caagcgaagccaggttttggttttgagttggatcaaggtcaatatatgcagtttgccagt
ggctttgcctatgaggaaacactcgatcaagccaatgcgattgaagcgactttgtatgat
atgcaattggctaaaccgatggatcgcttggtctgtggtgatgtgggctttggtaaaacc
gaagttgcgatgcgcgcagcattcttagccgtgcagaacaacaaacaagtggccgttttg
gtgccgacgacgttgctggcccaacagcattatgagtcgtttaaagaccgttttgcagac
tggcctattcgtatcgaagttttatcacgttttggcagcagtaaatcacatacgaaaacg
atcgaagacttagctgagggcaaagtcgatattgtgattggtacgcataaaattctacaa
gaaagtgtccagtttaaagacttaggcttgatgattgtggatgaagaacaccgctttggt
gtacgcgataaagagcggattaaagcgatgcgtgcagatgtggatatgttgactctgact
gcaactccaattccacggactttaaacatggcctttagtggcatgcgcgatctatccatt
attgccacaccacctgcacgacgtttggcggtaaaaacttttgtgcaagaacatacgggt
gattcagttaaagaagccatcttgcgtgagttactgcgtggtggccaagtttatttcttg
cataatgaagtagaaaccattgagcgtgcagcggagactcttcgagagttggttcctgag
gcgcgtgtagctgttgcacatggtcaaatgcgtgaacgcgagttagaacaagtcatgcag
cagttttaccataaagaatataatgtgctggtttgttcaaccattattgaaacagggatt
gacgttccgaatgccaataccattttaattgaacgggcagataagctgggtttggcgcag
ttgcatcaactacgtgggcgtgtagggcgctcgcatcaccaagcttatgcctatctgttg
gtgccatccatcaaagggttgaaaggcgatgctgaaaaacgtctggatgcgattcagcgg
gcatcgacattaggtgcgggctttatgttagcgacggaagatttagaaattcgcggagcg
ggagagctactcggcgagcaacaaagtggttccatgcaagccattggttatagcttgtat
atggagatgctcgaaaaggcgaccaaagccattcaaaagggcaaaaccccaaacttcgat
gcgccactctcactgaccgcagaaatcaatttacatatgccggctttgattccagacgaa
tatctaggagatgtccatcagcgtttattgttctataagcgcattagtaatacggacggt
caggaaaaactcgataacattcgtatggagttgattgaccgttttgggataccgccacaa
cctgtgaagcagctttttgctgtgcatcagatgcgtttgaaagcggaaacactgggcatt
accaaagtcgatattgctgccaatggtggtgcgattgaattttcaccagatactcctgtt
caggcgattagtattattcagatgatgcaaaaacacccgacctcttttaggatggagggt
ggtcagcgcttaaaggtgatggtaatgctagaggaatatgaaaaacggattcaatttatc
aatgacttattggaaagtttgttgaaagaattgcattaa
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integrated database retrieval system
