Arthrobacter jinronghuae: N2K98_00245
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Entry
N2K98_00245 CDS
T09565
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ajr
Arthrobacter jinronghuae
Pathway
ajr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N2K98_00245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajr03400
]
N2K98_00245
Enzymes [BR:
ajr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N2K98_00245
DNA repair and recombination proteins [BR:
ajr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N2K98_00245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UWX78701
LinkDB
All DBs
Position
46666..49296
Genome browser
AA seq
876 aa
AA seq
DB search
MATGGGKNQETVSVEGHRLRLTNLDKVLYPETETTKADVIAYYAAVAEYMLPHSRNRAAT
RKRWVHGVGTPEHPGQVFFQKNLEDSAPSWVKRFSIEHKTSTNTYPVVNDLATLTWLAQS
AALEIHVPQWQFGPRGKIGNADRMVLDLDPGEGAGLAECAEVARLARAILSDMGLDARPV
TSGSKGIHLYAALDGSQSSDDINAVAHELARALEADHPDLVVSDMKKTRRVGKVLVDWSQ
NNGNKTTICPYSLRGRFTPTVAAPRTWKELEDPDLAQLDYLQVMDRVRSGSDPLAGMESG
AFEAEALEEAETGDTEAGSGGDRLTKYRSMRDAAKTPEPVPEEPSTSSEGNSFVIQEHHA
RRLHWDFRLEHDGVLVSWALPKGPPSTSGKNNLAVQTEDHPLDYGKFEGHIPKGEYGGGD
VTIWDHGTYEREKWRDGKEVIAVLHGQPDGGLAREGAADRRYALIHTGSGGDKANNNWLI
HLMKNQPKPGEKGTPEAPADGSAAAPADAPADAPESPTESVAAAARTRPATAAAPAKTSS
VDVGKVARDAEDASVPSVEPMMATLGSRAEINDDDEWAFEMKWDGVRAVVTVTPEGTRLI
SRNGNDMTAAYPELQDLSAHLNGERAVLDAEIVALNKAGRPDFGLLQPRMHLTKPREIAA
AAGRTPVHLMVFDLLWLDGNSLADLTYEQRREILEQAVEPVPGGHLQVPPALDMSMDEAV
AASKELGLEGVMAKRRTSTYNPGRRSKNWVKLKNQLTQEVVVVGWRPGQGNRQNKVGSLL
VAVPDGVDLKYIGRVGSGLSEKDLATIGPRLKKMSRKTAPLDDVPSADASDAQWVRPALV
GEVTFSERTGTGKLRHPVWRGLRPDKKPSDVVVETV
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaggcggaggaaaaaaccaggagaccgtcagtgtggaggggcaccggctccgc
ttgaccaacctggacaaggtgctttatccggaaacggagaccaccaaggcggacgtgatt
gcctattacgctgccgtggccgagtacatgctgccgcactcgcgcaaccgagcggcgacc
cgcaagcgctgggtgcacggtgtggggactcccgagcatcccggccaggtgttcttccag
aagaacctcgaggactccgctccgtcctgggtgaagcggttctcgatcgagcacaaaacc
tccaccaacacctacccggtggtgaatgacctggcaacgctgacctggctggcccagtcc
gccgccctcgaaatccatgtgccgcagtggcagttcgggccgcgcggcaagatcggcaat
gcggaccggatggttctggacctcgaccccggtgaaggggcggggctggccgaatgcgcc
gaagtggcccggctggcaagggccatcctctctgacatgggcctcgatgcccggcccgtg
accagcggttccaagggcatccacctgtatgccgcactggacggaagccagagctccgac
gacatcaatgcggtggcccatgagctggcccgcgccctggaggcggaccatccggatctg
gtggtcagcgacatgaagaagacgcggcgcgtgggcaaggtgttggtggactggagccag
aacaacggcaacaagaccactatctgcccctactcgctgcggggacggttcacgcccacg
gtggccgccccgcggacctggaaagaactcgaggatccggatctcgcccaactggactac
ctgcaggtgatggaccgcgtccgcagcgggtccgatccgctcgccggcatggaaagcggc
gccttcgaggcagaagcactcgaggaagcggagaccggcgacaccgaggccggctccggc
ggggaccggctgaccaagtaccggagcatgcgggacgccgcaaagacaccggaacccgtc
ccggaggaaccgtccacttcctcggagggcaacagcttcgttatccaggagcaccacgcc
cgccggctgcactgggacttccgcttggagcacgacggcgtgctggtgtcctgggcgctg
cctaagggcccgccgtcgacgtccggaaagaacaatctggccgtgcagaccgaggatcat
ccgctggattacggcaaatttgaaggacatattcccaaaggggaatatggcggcggggac
gtgaccatctgggatcacggcacgtatgagcgggaaaagtggcgggacggcaaggaagtc
atcgccgtgctccacggccagcccgacggcggcctggcccgggaaggggccgccgaccgg
cgctacgcactgatccacaccggctcgggcggcgacaaggccaacaacaactggctgatc
cacctcatgaagaaccagccgaagccgggcgaaaaggggacgcccgaagctccggccgac
gggtccgccgccgctcctgcggatgcgcccgcggacgcgccggaatcacccacggagtcc
gtggccgctgccgcccggacacgccccgccacggccgccgctccggcaaagacctcgtcc
gtcgacgtcgggaaggtggcccgcgacgcggaagacgcctcggtgccctcggtcgagccg
atgatggcaaccctcggcagccgggctgagatcaacgacgacgacgagtgggccttcgaa
atgaaatgggacggcgtgcgcgccgtcgtcacggtaacgccggaaggcacccggctgatc
tcccgcaacggcaatgacatgaccgccgcctatccggaactgcaggacctcagcgcgcac
ctcaacggggaacgggcggtactggacgccgaaatcgtcgcgctgaacaaggccggccgg
ccggacttcggcctgctgcagccccgcatgcacctgaccaagccgcgggaaatcgctgcc
gccgccgggcggacgccggtacacctgatggtctttgacctgctctggctggacgggaac
tcgctggcggacctcacctacgaacaacgccgggaaatcctcgagcaggccgtcgagccc
gtccccggcgggcacctccaggttccccccgcactggacatgtccatggacgaggcggtg
gcggccagcaaggaactggggctggaaggtgtgatggccaaacgccgcacgagcacctac
aaccccggcaggcgttccaagaactgggtaaagctgaagaaccagctcacccaggaggta
gtggtggtgggctggcggccggggcagggcaaccggcagaacaaggtcggttccctcctg
gtcgccgttccggacggggtggacctgaaatacatcggacgggtcgggtccggactgagc
gagaaggacctcgccacaatcggcccgcgcctgaagaagatgtcccgcaaaacggcgccg
ctggacgatgttccgtccgcagatgcctccgatgcccagtgggtgcggccggcactggtg
ggcgaagtgaccttctccgaacgcaccggcaccggaaaactccgccatcccgtctggcgc
ggcctgcgccccgataagaaaccctccgacgtcgtggtggagaccgtctag
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