Arthrobacter jinronghuae: N2K98_04950
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Entry
N2K98_04950 CDS
T09565
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ajr
Arthrobacter jinronghuae
Pathway
ajr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N2K98_04950 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ajr03400
]
N2K98_04950 (mfd)
Enzymes [BR:
ajr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N2K98_04950 (mfd)
DNA repair and recombination proteins [BR:
ajr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N2K98_04950 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
PBP_like_2
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UWX79552
LinkDB
All DBs
Position
1080270..1083869
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AA seq
1199 aa
AA seq
DB search
MSLNGLRAALAEDPSYARVRTLSSRPPAGRSEDLQIGAPQGMRAALLAEIVDGLAAAVTG
DGIPPVVLAVTATGREAEDLAAALRSYLPLAGIEEFPSWETLPHERLSPRSDTVGRRLSV
LRRLAHPETAPVQIVVAPVRAVVQPLVAGLGELKPVALKVGQEQPFDSVVQALSEAAYAR
VDMVSHRGEFAVRGGILDVFPPTEDHPIRIDFFGDEVDSMRWFAVADQRTLTGEHITHPS
ELYAPPCREILITPSVMSRAAKLKDQMPAASDMLEKIAGGIAVEGMESLAPVLVDSMVPL
MGELPRGSIAVVIEPEKVRARAHDLAATNEEFLAAAWATASDGGAAPLDLSAGLASDLDA
ASFRSLADTRTAAHANDVAWWSITSFNPDDETVLDIDTLTINAREPRGYRGDVAEMMEFI
GSRVRDAWRVVVVTEGPGPASRLAELFRENDIPAALVESLDEEPRPGVIAITTASAGRGY
VFDTLKTGLLTEADLLGRASTYSTRDMRKMPSKRRNAVDPLQLQEGDFVVHEQHGVGKFI
ELIQRATGAGTSKTVREYMVLEYASSKRGAPGDRLFVPTDQLDQITRYVGGETPVLSKMG
GSDWAKTKSRARKAVKEIAGELIRLYSARMASKGHAFAADTPWQRELEEAFPYVETPDQL
TTINEVKADMEREVPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHM
ETFAERFSGFPVRVDSLSRFQTAKQAKATIEDVKTGSVDVVIGTHRLLSQEVQFKDLGLV
IVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPV
LTYVGPYTDKQASAAIRRELMREGQVFFVHNRVSSIDRTAAHLRELVPEARIAVAHGQMS
ESKLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDRADHFGLSQLHQLRGRVGRG
RERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLGGEQSGH
IAGVGFDLYIRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHDYVPGERLRLEAYRKLA
SALTNEAIDEVLAELVDRYGEPPQEVKNLIDVARFRVDARAAGLTDVALQGNFIKFAPAD
LPESRTMRLQRMYPGALVKPALNAVLVPKPKTARIGGRDLVDAEILAWAKQVLDAVFKE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggactgcgtgccgccctcgctgaggacccctcgtacgcaagggtgcgg
accctctcctcccggccgcccgcaggccgcagcgaagacctgcagatcggggctccgcag
ggcatgcgtgccgccctgctggctgaaatcgtggacgggctggccgcggcggtaaccggc
gacggcattccgccggtggtgctggccgtgacggcgacgggacgcgaggcggaggacctg
gcggccgccctgcgcagctatcttccactcgccggcatcgaagaattccccagctgggaa
accctgccgcacgagcggctgtccccgcgttcggataccgtcggacggcgcctgtcggtg
ctccgccgtctggcgcacccggaaaccgctccggtgcagattgtggttgccccggtgcgc
gccgtggtccagccgctggttgccggactgggcgaactcaagccggtggcgctgaaggtc
ggccaggaacagcccttcgactccgtggtgcaggcgctgtcagaggccgcctatgcgcgg
gtggacatggtctcccaccgcggagaattcgccgttcgaggcggcatccttgacgttttc
ccgcccaccgaggaccaccccatccgcatcgacttcttcggcgacgaagtggattccatg
cgctggttcgcggtcgcagaccagcggaccctcaccggggagcacatcacccacccctcc
gagctctacgccccgccctgccgcgaaatcctgatcacgccgtcggtgatgagccgcgcc
gccaagctcaaggaccagatgccggcagcctcggacatgctggaaaagattgccggcggc
attgccgtggaaggcatggaatccctggctccggtactggtggactccatggtcccgctg
atgggcgagctgcctcgtggatccattgccgtggtcatcgagccggagaaggtccgggcc
cgtgcgcacgacctcgccgccaccaacgaggagttcctggccgcagcctgggccacggcg
tccgacggcggtgcggcgcccctggacctttccgccgggctggcctcggacctggacgcc
gcaagcttccgttccctggctgatacgcgcactgccgcgcacgccaatgacgtggcctgg
tggtccatcacgtccttcaaccccgacgacgaaaccgtcctggacatcgacaccctgacc
atcaatgcccgtgaaccgcgcggctaccggggcgacgtagcggaaatgatggagttcatc
ggcagccgtgtccgggacgcctggcgcgtggtggtggtgaccgaggggccgggcccggcc
tcccgcctggccgaactgttccgggagaacgacattcccgcagcgctggtggaatccctg
gacgaggaaccgcgccccggcgtcatcgccatcaccacggccagcgccggccgggggtat
gtctttgacaccctcaagaccgggctgctgaccgaagcggacctgctcggccgcgccagc
acctactccacccgcgacatgcgcaagatgccctccaaacggcgcaacgccgtcgacccg
ctgcagctgcaggagggcgacttcgtggtgcacgagcagcacggcgtgggcaagttcatt
gaactcatccaacgcgccaccggtgccggcaccagcaagacagtgcgcgagtacatggtg
cttgaatacgcgtcctccaagcgcggggcgccgggggaccggctgttcgtccccaccgac
cagctggaccagatcacccggtacgtgggcggtgaaacccctgtcctgtccaagatgggc
ggctccgattgggccaagaccaagagccgggcacgcaaggcggtcaaggagatcgccggg
gagctgatccggctctactccgcccggatggcgtccaagggccatgccttcgcagcggac
accccgtggcagcgtgaactcgaggaagccttcccctatgtcgagaccccggatcagctg
accactatcaacgaggtcaaggcggacatggagcgggaagtgcccatggaccggctggtc
tccggcgatgtgggctacggcaaaaccgagatcgcggtgcgtgcagcgttcaaggccgtg
caggacggcaagcaggtagcagtgctggtgcccaccaccctgctggcccagcagcatatg
gagaccttcgccgaacgcttctccggcttcccggtccgggtggattcgctctcgcgcttc
cagaccgccaagcaggccaaggcaactatcgaggacgtcaagaccggctcggtcgatgtc
gtcatcggcacccaccgcctgctgtcccaggaggtccagttcaaggacctgggcctggtg
atcgtggatgaggagcagcgcttcggcgtcgaacacaaggaagcgctgaagaagatgcgc
accaacgtggacgtgctggccatgagcgccaccccgattccccgcaccctggaaatgtcc
ctcaccggtatccgcgagacgtccaccctggccaccccgccggaggaacgccatccggtg
ctcacctatgtgggcccctacacggacaagcaggcctccgccgccatccgccgcgaactc
atgcgcgagggccaggtgttctttgtccacaaccgggtgtcctcgattgaccggacagcc
gcgcatctgcgggaactggtgccggaggcgcggatcgccgtcgcccacggccagatgagc
gagtccaagcttgagcagatcatcgtggatttctgggagaagcgcttcgacgtgctggtg
tgcaccaccatcatcgaaacgggcctggacatctccaatgccaacaccctgatcgtggac
cgtgcggaccacttcgggctttcacagctgcaccagctgcgcggccgggtgggccgcggc
cgggagcgggcgtacgcctacttcctgtacccgtcggagaagccgctgggcgaggtggcg
ctggaacggctgaaggccgtggccacgcacaacgagctgggggccggcatgcagctggcg
atgaaggacctggagatccgcggtgccggcaacctgttgggcggggaacagtccggccac
attgccggcgtcggctttgacctgtacatccggctggtgggcgaagccgtggccgattac
cggggcgaggccgaggagaaggcggccgaaatgaagatcgagctgccggtcaacgcccat
ctcccgcacgactacgttccgggggagaggctgcggctggaggcctaccgcaagctggcg
tctgcgctcaccaacgaggcgatcgacgaagtgctggccgaactggtggaccgttacggc
gagcccccgcaggaagtgaagaacctgatcgatgttgcccgcttccgggtggatgcacgt
gccgccggcctgaccgacgtcgcgctgcagggcaacttcatcaagttcgcaccggcggac
ctgcccgaatcgcggaccatgcggctgcagcggatgtatcccggggcgctcgtgaagccg
gcgctgaacgccgtgctggtaccgaagccgaagaccgcccggatcggcggcagggatctg
gtagacgccgaaatcctggcctgggccaagcaggtgctcgatgccgtgttcaaggagtaa
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