Advenella kashmirensis: TKWG_19270
Help
Entry
TKWG_19270 CDS
T02117
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aka
Advenella kashmirensis
Pathway
aka03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TKWG_19270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aka03400
]
TKWG_19270
Enzymes [BR:
aka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TKWG_19270
DNA repair and recombination proteins [BR:
aka03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TKWG_19270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AFK63667
UniProt:
I3UF79
LinkDB
All DBs
Position
complement(3315924..3318467)
Genome browser
AA seq
847 aa
AA seq
DB search
MSLADYQRKRRFDRTPEPQEDAIGGGRPIFVVQLHHASHRHYDFRLQVAGVLKSWAVPKG
PSLDPSVKRLAVQVEDHPVSYARFEGDIPKGEYGGGHVRIFDSGIWSTNEEVEAQLAKGH
LKFELFGDILQGGWHLIRSHRRSRQQQWLLIKQDDAFAGDKEADDFVDESAALVTDGKGP
AAKKASAGKKTAAQKRAKDRAAKNITSKGTTSKAVADTKSQKNPATAAWRAQLDAFKGAK
RQPLQHKPFAPQLCLTADKAPVGDDWLHEVKWDGYRLLCTIVDGTPALWSRNGLDWTARL
PDVASDMASLGLQQAAFDGELVVLEGVHSNFSALQATLSGEKQAPLSYLLFDLIHLQGFD
LCDVPLQERKALLETVLQGAPSRLRYSSHLVGSGPQVFARVTAEKLEGIISKRVNASYHA
GRSRSWQKIKMELSDEFAIAGFIEPKGSRMGIGSLLLALPEGKSGWRLAGRVGTGMNDAM
LRQLSTLLRPVAETDPTVTVAGIDSDLRRAKWVKPRHVVEVFYRGHSSQGLLRHTAFKTL
REDKSVADLRGSQAKEEPMKKDTVQISSPDRLVYPEMQVSKQDVADYYERVMDWLLPGVA
GRPLSVLRCPDGTQKACFFQKHHTAGMDVSTVSLQEEQGGRQDYLMVRDKTDVMQLVQFN
SLEFHPWGALADSPDDCDRLVFDLDPSEQVSWATVKKAARQVRDLLEQLQLQSFVRTTGG
KGLHVVAPLKPPVPWEDARQFARAFAESLAGAHPDTYIATASKKQRKGLIFVDYLRNGRG
ATSVCSYSLRARPGAAVATPLRWEELGRVKSSDAFHIRNLPQRLARLASDPWEEMTAIRQ
SLPDLPE
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgccgactatcagcgcaaacgcaggtttgaccgtacaccggaaccgcaagag
gatgcaattggcggcggtcggcccatctttgttgtccagctacatcacgccagccatcgc
cattatgattttcggctgcaggttgccggggtgctcaagagctgggcggtgcccaaaggc
cccagccttgacccgtcggtcaaacgtctggcagtgcaagtagaggaccaccccgtcagc
tatgcccgtttcgagggtgatattcccaaaggggaatacggtggaggacatgtcagaata
tttgacagcggaatctggagcaccaatgaagaggtcgaagcgcaactggccaaaggacat
ttgaaatttgaactgtttggcgacatcttgcaaggcgggtggcatctgatccgcagccat
cgccgcagtcgccagcaacagtggttactgatcaagcaggacgatgcatttgccggggac
aaagaggctgatgactttgtcgatgagtctgcagcgttggtcacggatggcaaagggcca
gccgcaaaaaaagcgagtgcgggtaaaaagaccgccgcccaaaaaagagcaaaagacagg
gcagcaaaaaatataacttctaaaggcacaacttccaaagcagtagccgatacgaaaagc
cagaagaatccggcaaccgccgcctggcgtgcgcagcttgatgccttcaaaggcgcaaag
cgacagccgttgcagcacaaaccatttgcgccacaattatgccttactgcagacaaggcg
ccggttggcgatgattggctgcatgaagtcaaatgggacggctatcgcctgctgtgcacg
attgttgatggcactccggccttgtggtcgcgtaatggtctggactggacggcacgcctg
cctgatgtggccagtgatatggcatcgctcgggctgcagcaggctgcctttgatggcgaa
ctggttgtgctcgagggcgtgcacagcaatttttccgccttgcaggcgacgctgtctggc
gagaagcaggcgccattgagttatctgttgtttgacctgattcatctgcaagggtttgat
ctgtgcgatgtgccgttgcaggaacgcaaggcattgctggagacggtattgcaaggcgcg
ccatcacgattgcgatacagttcgcatctggtgggttccggacctcaggtgtttgcgcga
gtaacagcagaaaaactcgaaggcattatttcaaaacgggtaaatgcgtcatatcacgcc
ggtcgcagcagaagctggcagaaaataaaaatggaactcagtgatgagtttgccattgcc
ggctttattgagcccaaaggaagtcgcatgggtattggttcattactgctggcattgccc
gagggcaagtcaggctggcgactagccgggcgtgtcggcaccggcatgaatgatgctatg
ttgcgacaactatcgaccctgttgcgaccggttgcagagacagacccgacggtgacagtt
gcaggcatagattcggatttgcggcgtgcaaaatgggtcaagccgcgccatgtggtggag
gtgttttatcgtggacacagcagtcagggattgttgcgtcacacggcgttcaagacatta
cgagaagacaagtctgttgctgatctgcgaggcagccaggcaaaagaggagcctatgaaa
aaggatactgttcaaattagcagcccggaccgcttagtgtaccccgagatgcaggtgagc
aagcaggatgtggccgactattacgaacgagtgatggactggctgttgccgggggtagcc
ggacggccgctatcggtgctgcgctgcccggatggcacgcaaaaagcctgctttttccaa
aaacaccatacggccggcatggatgtcagtacggtcagtctgcaagaagagcagggtggc
aggcaggactatttgatggtgcgggacaagacagatgtcatgcaactggtgcagtttaac
tcgctggagttccatccatggggtgcgctggccgacagcccggatgattgcgaccgtctg
gtatttgatcttgacccttctgagcaagtgtcgtgggccacggtgaaaaaggcggcgcgt
caggtgcgcgatctgctggagcaactgcagctgcaatcgtttgtacgcacgaccggcggt
aaagggctgcatgtggtcgcgccgctgaaaccgcccgtgccctgggaggacgcaagacag
tttgcgcgcgcttttgccgagtcgctggccggggcgcatccggacacctatatcgcaacg
gcctccaaaaaacagcgtaaaggattgatattcgtggactatctgcgcaatgggcgtggc
gccaccagtgtctgctcgtattcgctgcgtgccaggcctggtgccgcagtggccacaccg
ctgcgctgggaagaacttgggcgcgtaaagtcgtcggacgccttccatatccgcaatctg
ccgcaacgcctggcccggcttgccagtgacccctgggaggagatgactgcgatcaggcag
tcactacctgatctgcctgagtga
DBGET
integrated database retrieval system
