Arthrobacter koreensis: N9A08_00280
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Entry
N9A08_00280 CDS
T09441
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ako
Arthrobacter koreensis
Pathway
ako03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ako00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N9A08_00280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ako03400
]
N9A08_00280
Enzymes [BR:
ako01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N9A08_00280
DNA repair and recombination proteins [BR:
ako03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N9A08_00280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UYB36180
LinkDB
All DBs
Position
52600..55188
Genome browser
AA seq
862 aa
AA seq
DB search
MATTGTAPKQRETVSVDGHRLRLTSLDKVLYPETGTTKADVLSYYAAIAPTLVPYARNRP
ATRKRWVNGVGTPEHPGQVFFQKNIDDSAPSWVKRYTIEHKDHSNVYPLVNDLATLTWLA
QLAALEIHVPQWQFGPRGVRQNPDRLVLDLDPGEGASLADCAEVARLARSILTDMGLDAR
PVTSGSKGIHLYAALDGGQTSDEVSAVAHELARALEADHPDLVVSDMKKTLRKGKVLVDW
SQNNANKTTICPYSLRGRFRPMVAAPRTWEELEDPDLAQLDYEDVLDRIEDIGDPLAGMH
TGEADPDVLESDAEPDKLHKYRSMRDAAKTPEPVPAEAPKAVEGDGNSFVIQEHHARRLH
WDFRLERDGVLVSWAVPKGPPTTPDKNHLAVQTEDHPLDYGGFSGTIPKGEYGAGEVTIW
DHGTYETEKWRPEKEVIVTVHGQPDGGLARDGSAVRRFAFIHTGANEPGKSNWLLHLMKD
QGSKTPKTTNAAPAAKPAKTAKGPAQATKAAAKARPDPLPLPDSAAVKKDIQDSGMPSLK
PMLATLGSRADINDDADWAFEMKWDGVRAIAEVTPEGTRLISRNGNDMTVAYPELQELGG
SLNGERAVLDGEIVALNKAGRPDFGLLQPRMHLTRTRDAEAAAAKTPVQFMVFDLLWLDG
NSLLDLSYEQRREILEQAVESGHDGGHIQVPPALDLGMDDAVEASKELGLEGVVAKRRSA
GYSAGTRSRSWVKLKNQFSQEVVIVGWRPGQGNRANKVGSLLVAVPDGTDLQYIGRVGSG
LSEKDLALVGSRLKKLSRKTAPLDDVPRADASDARWVRPVLVGEVTYAERTGTGKLRHPV
WRGLRPDKRPSDVVPEIPAPPS
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgggaacggccccgaagcagcgggagacggtcagtgtggacgggcaccgc
ctgcgcctgacatccctggacaaggtcctctacccggaaaccggcaccaccaaggccgat
gtcctttcctactacgcggccatcgccccaaccctggttccctatgcacgcaaccgtccg
gccacgcgcaaaaggtgggtcaacggcgtcggaaccccggagcatcccggacaggtcttc
ttccaaaagaacattgacgactccgccccgagctgggtgaagcgttacaccattgagcac
aaggaccactccaacgtctatccgctggtcaatgacctggcgacgctgacctggctggcg
cagctggcagccctggagatccacgttccgcaatggcagttcggcccccgcggcgtccgg
cagaacccggaccgcctggtcctggacctggacccaggagagggcgcttccctggcggac
tgtgccgaagtcgcccgcctggcccgcagcatcctcacggacatgggcctggacgcccgg
ccggtcaccagcggatccaagggcatccatctctacgctgccctggacggcgggcaaacc
tcggatgaggtcagcgccgtggcgcatgaactggcacgcgcgttggaagcggaccatccg
gacctggtggtcagcgacatgaaaaagaccctgcgcaagggcaaggtgctggtggactgg
agccagaacaacgccaacaagaccaccatctgcccctactcgttgcgcggccgcttccgg
cccatggtcgccgcaccgcggacctgggaggagcttgaggacccggacctggcgcagctg
gattacgaggacgtcctggaccgcatcgaggacatcggggacccgctggccggcatgcac
acgggcgaagccgatcccgatgtcctggaatccgacgccgaaccggacaagctgcacaag
taccgcagcatgcgagacgccgcgaagactcccgaacccgtgcccgccgaagcgccgaaa
gccgtggaaggggatgggaacagcttcgtcatccaggaacaccatgcccgcaggctgcac
tgggatttccggctggaacgggacggtgtgctggtttcctgggcggtgcccaagggccct
cccactacgccggacaaaaatcacctggccgtccagaccgaggaccacccgctggattac
ggcgggttctccgggaccattccgaaaggcgaatacggtgccggagaggtcaccatctgg
gaccacggcacctatgagacggagaagtggcgcccggagaaggaagtgattgtcacggtt
cacggccagcccgacggcggccttgcccgcgacggttcggcggtgcgccgcttcgcgttc
atccacaccggcgcgaacgagccggggaagagcaattggctgctgcacctgatgaaggac
cagggttccaaaacacccaaaaccaccaacgcagctccagcggcgaaaccggcaaagacc
gctaaaggtccggcgcaggcaaccaaggccgcggccaaggcccgcccggatccgctcccg
ctgccggacagtgcagcggtgaagaaggacatccaggactccggcatgccgtcgctgaag
ccgatgttggcaaccctgggttcccgggcagacatcaacgacgacgccgactgggccttt
gagatgaaatgggacggtgtgcgggccatcgcggaggtaacccccgaaggaacccggctg
atcagccgcaacggcaacgacatgaccgttgcctaccccgaactgcaggagctcggcggg
tcgctgaacggagagcgcgccgtgctggacggggagatcgttgcgctgaacaaggccggc
cgcccggactttggtctgctccagccgcgcatgcacctgacccggacccgcgatgcggaa
gccgcggccgccaagacaccggtgcagttcatggtctttgacctgctctggctggacggg
aactcgctgctggacctgagttacgaacaacgccgcgaaatactggaacaggcggttgaa
tcggggcacgacggcgggcacatccaggttccgcccgccctggacctgggcatggacgac
gccgttgaggccagtaaggaactcggccttgagggtgtggtggccaagcgccgctccgcc
ggctactcggcgggcacccggtcccgcagctgggtcaagctcaagaaccagttcagccag
gaagtagtgattgtgggctggcgtccggggcagggaaaccgggccaacaaggttgggtcc
ctgctcgtggcggttccggacgggacggatctgcagtacatcggccgggtcgggtccggc
ctgagcgagaaggaccttgccctggtgggttcccggttgaagaaactctcccgcaagacc
gcacccctggacgacgtgccccgagccgacgcgtccgacgcccgctgggtccgccctgtc
ctggtaggagaggttacctacgccgaacgcaccggaacgggcaagctccgccatcctgtg
tggcgcgggctgcggccggataagcggccctccgacgtcgtacccgaaataccggcgccg
ccgtcctag
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