Arthrobacter koreensis: N9A08_05225
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Entry
N9A08_05225 CDS
T09441
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ako
Arthrobacter koreensis
Pathway
ako03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ako00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N9A08_05225 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ako03400
]
N9A08_05225 (mfd)
Enzymes [BR:
ako01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N9A08_05225 (mfd)
DNA repair and recombination proteins [BR:
ako03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N9A08_05225 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_30
RecG_dom3_C
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
UYB37060
LinkDB
All DBs
Position
1129201..1132818
Genome browser
AA seq
1205 aa
AA seq
DB search
MSLNGLRAALAEDKSYSRLRAHAARVPAKRSQDLEIGAPQGMRAALLAEMVDGLAEAHDA
GTGAGSDGAPPVVLAVTATGREAEDLAAALRSYLPLAGIEEFPSWETLPHERLSPRSDTV
GRRLSVLRRLAHPENHPIQIVVAPVRAVVQPLVKGLGDLQPVSLAVGDERPFDAVVKALA
DAAYARVDMVSHRGEFAVRGGILDVFPPTDDHPIRIDFFGDEVDSMRWFAVADQRTLTGE
HVVHPKELYAPPCRELLITPDVMSRAAKLQGQMPAAADMLEKIAGGIAVEGMESLAPVLV
DEMVPLMSQLPAGSISVVIEPEKVRARAHDLESTNEEFLAAAWATASDGGAAPVDLSAGL
SADLEAASFRSLTDTRSAALANDVAWWAITSFNPDAETVLDIDTLTINAREPRGYKGDVA
EMMDFIGSRIRDQWRVVVVTEGPGPASRLAELFHDNDIPAARVDSLDSAPQPGIIEITTA
SAGRGFVFDNLKMGLLTEADLLGRASTYSTKDMRKMPSRRRNAVDPLQLQEGDYVVHEQH
GVGRFVELLQRATGAGVNKTVREYLVLEYAPSKRGAPGDRLFVPTDQLDQITRYVGGETP
VLSKMGGSDWAKTKSKARKAVKEIAGELIRLYSARMASKGHAFGQDTPWQRELEEAFPYV
ETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL
LAQQHLETFSERFSGFPVRVATLSRFQTAKQAKEVIEGVLNGSVDVIIGTHRLLSQEVQF
KDLGLVIVDEEQRFGVEHKEALKKLRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPP
EERHPVLTYVGPYTDKQASAAIRRELMREGQVFFVHNRVSSIDRTAAHLQELVPEARIAV
AHGQMSEAKLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDRADHFGLSQLHQLR
GRVGRGRERAYAYFLYPSEKPLGETALERLKAVAAHNELGAGMQLAMKDLEIRGAGNLLG
GEQSGHIAGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNAHLPHDYVPGERLRLE
AYRKLASALTNDAIDEVLAELVDRYGEPPQEVKNLIDVARFRVDARSAGLTDVALQGNFI
KFSPGDLPESRTMRLQRMYPGSQVKPALNAILIPKPKTAKIGGRDLQDAEMLQWAHQVLD
AIFKE
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggtctgcgcgccgccctcgccgaggacaagtcctactcccgcctcagg
gcgcatgccgcgcgggtcccggccaagcgcagccaggacctggagatcggcgcaccgcag
ggtatgcgggcggcgctgctggcggaaatggtggacggcctggcggaagcgcacgacgcc
ggcaccggcgccgggagcgacggcgcacctcccgtagtcctcgccgtcacggccaccggg
cgggaggcggaagacctcgccgcagccctgcgcagttaccttccactggccggaatcgag
gagttcccctcctgggagaccctgccccacgagcggctttcaccccgctctgacaccgtg
ggccgcaggctctcggtgctgcgccggctggcgcaccctgagaaccacccgatccagatt
gtcgtggcgcccgtccgcgccgtcgtgcagccgctggtcaagggcctgggtgacctgcag
ccggtgtccctggccgtgggagatgaacggccgttcgacgccgtcgtcaaggcgctcgcc
gacgccgcctacgcccgcgtggacatggtgtcccaccgtggcgagttcgctgtgcgcggc
ggcatccttgacgtgttcccgcccaccgacgaccatcccatccgcatagacttcttcggc
gacgaggtggactcgatgcgctggttcgccgtggccgaccagcggaccctgaccggcgag
cacgtggtccaccccaaggagctctacgcccctccgtgccgcgaactgctcatcaccccg
gacgtcatgagccgggccgcgaagctgcagggccagatgccggccgccgcggacatgctg
gagaagatcgccgggggcatcgccgtcgaaggcatggaatccctggccccggtgctggtg
gatgaaatggtgccgctgatgagccagctcccggccggctccatttccgtggtcattgaa
ccggagaaagtccgcgcccgcgcccatgaccttgaatccaccaacgaggaattcctggct
gccgcgtgggccacggcgtccgacggcggtgcggcgcccgtagatctctccgccgggctc
agtgcggacctggaggccgccagcttccgctccctgacggacacccgctccgcggccctg
gccaacgacgtcgcgtggtgggccatcacgtccttcaacccggacgccgagaccgtcctg
gacatcgacaccctgacgatcaacgcccgcgaaccgcggggttacaagggcgacgtggcg
gagatgatggacttcatcggctcccggatcagggaccaatggcgcgtcgtcgtagttacc
gaagggcctggcccggcctcccggctggccgaactgttccacgacaatgacatccctgcc
gcccgggtggactccctggactccgcgccgcagccgggcatcatcgaaatcaccaccgcc
agcgccgggcgcggcttcgtcttcgacaacctgaagatgggcctgctcaccgaggcggac
ctgctgggccgggccagcacgtactccaccaaggacatgcgcaagatgccctcccggcgg
cgcaacgccgtcgaccccctgcagctgcaggaaggcgactacgtggtgcacgaacagcat
ggcgtaggccggttcgtggagctgctgcagcgtgccaccggggccggggtaaacaagacg
gtccgtgaatacctggtgctggagtacgcgccgtcaaagcgcggagcgccgggggaccgg
ctgttcgtgccgaccgaccagctggaccagatcacccgctacgtgggcggggagaccccg
gtgctgtccaagatgggcggctccgactgggcgaagaccaagtccaaggcccgcaaggcc
gtcaaggaaatcgccggcgaactgatccggctctactccgctcgtatggcatccaagggg
cacgccttcgggcaggacaccccgtggcagcgcgagctggaagaggcattcccgtacgtg
gagacgccggaccagctgaccaccatcaatgaggtcaaggcggacatggaacgcgagatt
cccatggaccggctggtctccggcgacgtcggctacggcaagaccgagattgcggtgcgc
gctgcgttcaaggccgtgcaggacggcaagcaggttgctgtcctggtcccaacgacgctg
ctcgcccagcagcacctggaaaccttctccgaacgcttctccggtttccccgtccgcgta
gccacgctctcccgcttccagaccgccaagcaggcgaaggaagtcatcgaaggcgtgctc
aacgggtccgtggacgtcatcatcggcacgcaccggctgctctcgcaggaggtccagttc
aaggaccttggcctggtgatcgtggatgaggagcagcgcttcggcgtcgaacacaaggaa
gcgctgaagaagctgcgcaccaacgtggacgtgctggccatgagcgctacgccgattccg
cgaaccctggagatgtcgctgaccggcatccgcgagacctccaccctggccaccccgccg
gaggaacggcacccggtgctgacctatgttggcccgtatacggacaagcaggcgtcggcc
gcgatccgccgcgaactgatgcgtgaaggccaggtgttctttgtgcacaaccgggtctct
tccatcgacaggaccgccgcgcacctgcaggagctggtcccggaagcccggatcgccgtc
gcgcacggccagatgagcgaagcgaaacttgagcagatcatcgtggacttctgggagaaa
cggttcgatgtgctggtgtgcaccaccatcatcgaaaccggcctggacatctccaacgcc
aacaccctgattgtggaccgggcggaccactttggcctgtcccagctgcaccagctgcgc
ggacgtgtgggccgcggccgggaacgcgcctacgcgtacttcctctacccgtcggagaag
ccgctgggcgagacggcgctggagcggctgaaggctgtcgcagcgcacaacgaactcggc
gccggtatgcagctggccatgaaggacctggagatccgcggtgccggcaacctgctgggc
ggcgagcagtccgggcatatcgccggcgtcggcttcgacctgtacatccggctggtcggc
gaggccgtggcggacttccgcggcgaggccgaggagaaggccgccgagatgaagatcgag
ctgccggtgaacgcgcacctgccgcacgactatgttccgggggagcggctgcgcctggag
gcctaccgcaagctggcttccgcgctgacgaacgacgcgatcgacgaggtcctggccgag
ctggtggaccgctacggcgaaccgccgcaggaagtgaagaacctgatcgacgtcgcccgg
ttccgggtcgatgcgcgctcggccgggctgaccgacgttgcactgcagggcaacttcatc
aagttctccccgggcgacctgcccgaatcccggaccatgcgcctgcaacggatgtacccg
ggctcgcaagtgaagccggcgctgaatgcgatcctgatcccgaagcccaagaccgcgaag
atcggtggccgggacctgcaggacgcggagatgctgcagtgggcgcaccaggtgctggac
gcaatcttcaaggagtag
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