Atribacter laminatus: RT761_00458
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Entry
RT761_00458 CDS
T07333
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alam
Atribacter laminatus
Pathway
alam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RT761_00458 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alam03400
]
RT761_00458 (mfd)
Enzymes [BR:
alam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RT761_00458 (mfd)
DNA repair and recombination proteins [BR:
alam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RT761_00458 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
TRCF
Helicase_C
UvrB_inter
ResIII
SNF2-rel_dom
CdiA_C
Motif
Other DBs
NCBI-ProteinID:
QPM67258
UniProt:
A0A7T1AJU6
LinkDB
All DBs
Position
complement(460475..463561)
Genome browser
AA seq
1028 aa
AA seq
DB search
MNISQFLQKIIQQIRSANRCSLSTIQPVRPFIAQILSGTNYSPIFYMTASEEIKRKVFRQ
IEGLSFFNQDEMVAIGVGFEEKYSGIVLQKTLREKKNLVIVLNVNELDQEVVELENFMSL
SVLLEKGKKYQRDQLIDQFYRMGYERKDFVREKGDIAIRGEVVDVYPPDGIEPIRTYWWE
NIIEKMKNFQSDTQRTDRDLEHALVIPSDGEFKTIPLIKLIMEQASLIFWDDVFIENTHL
SHIPQVITGIVSRENLPEMVISASRPPTFFGEIPKLVNELKENQWGKTYLIFPSEKIELF
AAILDEEKIPYGRDVKSPGQIFLLKGFPAEGFILPELGFTVFTTQEIFGKDFTRPSKKRA
ESPIEEEMVSSLQPGDYIVHEEQGIGIFKGIQEMVLEGVHRVYLVIEYAAGDILYVPVES
ASLVQKYIGSGDIKPKISRLGKDEWGKAKQRVAQSIQETARELLEIYARRNLDQGHAFSL
NSTWHKQLELSFPYIETPDQKQAIVDVERDMESTRPMDRLICGDVGYGKTEIAIRAAFKA
VMDGKQVALLAPTTILSEQHYLTFKERLKRFPVRIAVINRFKSTQEQKQIVERVKNNQID
ILIGTHRLIQKDIQFHDLGLVIIDEEQRFGVMHKERLKKMKSTVDVLTLTATPIPRTLYL
SLTGIRDISVIETPPEGRKPVHTVVAPRSQKMIKEAIQYELDRKGQVFYVSPRIKNLMKI
YEELAMLFPDCQIGTAHGRLSGPDLEKVMEKFYNAEIDILLCTTIIEIGLDVPNANTLIV
DPATLFGLSQLYQLRGRIGRFDREAYAYLFYPRRLTHEAQERLDALLEFEGLGTGYKLAL
RDMEIRGAGNILGQAQHGFIQEIGFSLYTRMLQEEISRLKGENTETNPQTTIILQENAFF
PNWYMKQENERFSYYQRLLQAQKMNDVEDLRAEIEDRYGRLPREVETLLKITTLRYYGKI
ALVDTIEEKNGEIYIGAPIEVLVSFNEKFRNHGVKGMLVNYHGKQTLRIPFQNLNTLLRL
FDPLVGKG
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaacatttctcaatttcttcaaaaaattatccaacaaatccgatctgcaaaccggtgt
tcgctttcaacaattcaaccggttcgaccttttattgcccaaattttatccggaaccaat
tattctccaattttttatatgactgctagcgaagaaataaaaagaaaggtctttcggcaa
attgaaggtctttctttttttaatcaggatgagatggtagcaattggtgttggttttgag
gagaaatattcaggaattgttcttcaaaaaactcttcgtgaaaaaaagaatttagttatt
gtcttaaatgtcaatgaactcgatcaagaagtcgttgagttggaaaattttatgagcctg
tcagtattattggagaaagggaagaaatatcagcgcgatcaattgattgatcaattctat
cggatgggatatgaaagaaaggattttgtcagagagaagggtgatattgcgattcgtggt
gaagtcgttgacgtttatccccctgacgggattgaaccaatcagaacttactggtgggaa
aacatcatagaaaaaatgaaaaattttcaatccgatacccagaggaccgaccgtgatttg
gaacacgccttagtaattcccagtgatggagaatttaaaaccatacccttaattaagctt
ataatggaacaagccagtcttattttttgggacgatgtatttatagaaaacactcattta
tcgcatattcctcaggtgattaccggaattgtatccagggaaaatcttcctgagatggtt
atatcagcttctcgaccgccgactttttttggagaaataccaaaattggtcaatgaatta
aaggaaaaccaatggggaaagacttatttaattttcccgtctgagaagatcgaattattt
gcagcgatcttagatgaggaaaagatcccctatggcagagatgttaagagtccaggccaa
atttttcttttaaagggttttccggcagaaggatttatccttcccgaattgggttttacc
gttttcacaactcaggaaatttttggaaaagattttaccagaccgagtaaaaaaagagca
gaatcgccaattgaagaagaaatggtgagttcgcttcaaccgggtgattatattgttcat
gaagaacaaggaatcggaatttttaagggaatccaagaaatggttttggaaggagtacac
cgggtttatttagtcattgaatatgctgccggtgatatcctctatgttccagttgagagc
gcttccttggtccaaaagtatattgggagcggagatataaaaccgaagatatcccgattg
ggtaaagatgaatggggaaaggcaaaacagagagttgcccaatcaatacaggaaaccgct
cgggaattgctggagatatatgctcgtcgcaacttggatcaaggacacgctttttctctg
aattctacctggcataaacagctagagctttcttttccctatatcgaaacacctgaccaa
aaacaggcaattgttgatgtggaacgtgacatggagtctacacgaccaatggatcgactc
atctgtggtgatgtgggctacgggaagactgaaattgccataagagcagcttttaaagca
gttatggatgggaaacaagttgctttgttggcgccaacaaccattttatccgagcagcat
taccttacctttaaagagcgtttgaaaaggtttccggttcgaattgcggtcatcaaccgc
tttaagtcaacccaagaacaaaagcaaattgttgaacgagttaaaaataatcaaatagat
atcttaatcggtactcatcggctcattcaaaaagatattcaatttcatgacctcggttta
gttatcatcgatgaagaacagcggtttggggttatgcataaagaacggcttaaaaaaatg
aaatcaactgtggatgtcctcactttaaccgctactcctattcctcgaaccttatatcta
tcccttactggtatccgggatatcagcgttatcgaaacgcctcctgaaggacgtaagccg
gttcatacggtggttgcacctcgtagtcaaaaaatgataaaggaagcgatccaatatgag
ctcgatagaaaaggccaagtattttatgtgagccctagaattaaaaacttaatgaaaatt
tatgaagagttagcgatgctctttcctgattgtcaaattggaactgctcatggacgactc
tccgggcctgacctagaaaaggtaatggagaagttttataatgctgagattgatatttta
ctttgtacaacaattatcgagattggattagatgttccgaatgccaatactttgattgta
gatccggcaactctttttggattatctcaactctatcagttgcgtggtcgaataggacgg
tttgatcgagaggcttatgcctatttattttatccaagaagactaacccatgaagctcag
gagcgtttggatgctttgttggaattcgagggattggggacgggttataaattagccctt
cgcgatatggaaatccgaggagcgggaaatattttgggccaagctcagcatggatttatc
caggagattggtttttctctttatactcgaatgttacaagaagaaatttcccgactgaag
ggagaaaatactgaaacgaatccccaaaccaccataattttgcaagaaaatgcttttttc
ccaaactggtatatgaagcaagaaaacgagcgttttagctattatcaacgtttgttacaa
gctcaaaaaatgaatgatgttgaagatctgagggctgagatagaagatcggtatggacgc
ttgccaagggaagttgaaactctattaaaaattacaaccctgcgttattatggtaaaata
gcactggttgatacaattgaagaaaaaaatggggaaatttatatcggtgctccaattgag
gtgctggtcagcttcaatgaaaaattccgaaaccatggtgtaaaaggtatgttggtaaat
taccatggtaagcaaactttaaggataccatttcaaaatttaaatacattgttacgtctg
tttgatccgttggtaggaaaagggtaa
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