Acanthopagrus latus (yellowfin seabream): 119011550
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Entry
119011550 CDS
T08233
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03030
DNA replication
alat03410
Base excision repair
alat03420
Nucleotide excision repair
alat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119011550 (lig1)
03410 Base excision repair
119011550 (lig1)
03420 Nucleotide excision repair
119011550 (lig1)
03430 Mismatch repair
119011550 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alat03032
]
119011550 (lig1)
03400 DNA repair and recombination proteins [BR:
alat03400
]
119011550 (lig1)
Enzymes [BR:
alat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119011550 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
119011550 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119011550 (lig1)
DNA replication proteins [BR:
alat03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119011550 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119011550 (lig1)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119011550 (lig1)
NER (nucleotide excision repair)
Other NER factors
119011550 (lig1)
MMR (mismatch excision repair)
Other MMR factors
119011550 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
119011550
NCBI-ProteinID:
XP_036940660
EnsemblRapid:
ENSALTG00010014092
LinkDB
All DBs
Position
21:10736930..10789451
Genome browser
AA seq
1001 aa
AA seq
DB search
MQRSIASFFQPKSKDKDTQKKTTAEAVKRPAKSPLKVQNGVQEVDSPVKKVAKRSRQILD
SDDDDDAPVVKEVATKGQGDKEAGKTEKKDDVFKAVPTPLSPPPAPATPVTPATPATPAS
SASPGTPSTPNSISPSGIVKRKTARKMFPKRKLNESGSGSESQKEEAESREERGQQNKRP
RVESSASSPGNPGEPMEEGAKEERVEKAVTEANSSDEEVGNGKKEEGEEERVERKSSDEK
EEKAEGAVKQNEAKEKANDEKEVVEKDTQEGEESPKSQMAKKQKEAKEQKDKELPKKAPI
STFFAPRKTAVKTEKPETSDGGEKKTSAERKTSAEESKDMKGESTSGQTDYNPSRPNYHP
VDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFRSVLLLSPDDLLCCVYLCL
NQLGPAYLGMELGIGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFQ
PASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLA
EQSVLSALSQAVCLTPPGQVFPPAVIDAGKGMSAESKRAWIEEKSLILKQTYCEMPNYDV
LLPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQ
IHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDAEAVAWDREKKQIQPF
QVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKESFSEVEGEFVF
ARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGD
TVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYKFLKEH
ILQKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRF
LRIRDDKKPEDATSGAQIADLYKKQQQIQNQGEKVDPEDYY
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttcttccagcccaagagcaaggacaaagatactcagaag
aagactacagctgaagctgtgaaaagacctgccaaaagccccctcaaggtgcagaacggt
gtccaggaagttgactcacccgtcaagaaggttgccaaacgcagccgtcagatcctggat
agcgacgacgacgacgatgcgccggttgtaaaagaagtcgccaccaagggacaaggagac
aaagaagctggtaaaactgaaaagaaggatgatgtgttcaaggcagttcccacccctctg
tctcctccacccgccccagctacccctgtgacccccgccactccagccactccagcctct
tcagcatcacccgggacccccagcaccccaaactccatctccccctcagggattgttaaa
cgcaagaccgcgaggaagatgttcccgaagaggaagctcaatgagagcgggagcggcagt
gagagtcagaaggaggaggctgagtccagggaggagcggggtcagcaaaacaagcggccc
cgtgtggagagcagtgccagcagcccagggaaccccggtgaacccatggaggagggagca
aaggaagaaagagttgaaaaggcagtgaccgaggctaacagctctgatgaggaggtgggg
aacgggaagaaagaagaaggagaggaggagcgggtggagagaaagagctctgatgagaaa
gaagaaaaagctgagggggcggtaaagcaaaatgaagcaaaggagaaggcgaatgatgag
aaggaggtagttgaaaaggacacgcaagagggagaggagagcccaaaaagtcaaatggcg
aaaaagcagaaagaagcaaaagagcagaaagataaggagctgcccaagaaagcccccatc
agcactttctttgctccaagaaaaactgcagtaaaaacggagaaaccagaaacgagtgac
ggaggagagaaaaagacgagcgcagagaggaagacttcagcggaagagagcaaagatatg
aaaggtgagtcaacctcgggacaaacggactacaatccgtccaggcctaactaccatccc
gtggaccacgcttgctggaagcagggccaaaaagtgccgtacttggcagtggctcgcacc
tttgagaagattgaagaggactctggcaggctgagaaacattgagacgctgtcgaacctg
tttcgctccgtgctgctgctctctccagatgacctgctgtgctgtgtgtacctgtgtttg
aaccagctgggtccagcctacctggggatggagcttggcattggagagacggtgctaatg
aaagctgttgctcaagcaactgggcgacaattggacaaaatcaaggcagaagcgcaggag
aaaggagatttgggccttgtggctgaaagttcccgtagcaaccagcgcatgatgttccaa
ccagccagtctgacagcagggggcgtgttcaggaaattgaaggaaattgccagcatgagt
ggaaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgc
ttttctgaggcccgctacatagtcaggtccctggctgggaagctgaggataggcctggct
gagcagagtgtcctatcagcactaagccaggctgtgtgcctgaccccccctggacaagtt
ttcccacctgctgtgatcgacgcagggaaagggatgagcgctgagagcaagcgggcgtgg
atcgaagagaagagtctcattctcaaacaaacttactgcgagatgcccaattatgatgtc
ctactcccggttctccttaaagagggcatagacgagctacccaatcactgcaagttaact
ccaggcgtaccgctgagacccatgttggctcaccccaccaaaggggtcggcgaggtgatg
aagaggtttgacgaggcggcgttcacctgcgagtacaagtacgatggagaacgtgcacag
attcatattctggagagcggcgaggttcggatattcagccgcaaccaggaagacaacacc
agcaaataccccgacatcatctctcgcatccccaaggtgaagaaggattcggtggtatcc
tgcgtcctggacgcggaggcagtagcctgggatcgcgagaagaaacagatccaacctttc
caggtcctcaccacccgtaagagaaaggatgtggatgcctcagagatcaaagtccaagtg
tgtgtctacgcttttgacctcctctatctcaatggcgagtccctggtgcgacagccgttg
tgtcggcgtcgggctctgctgaaagaaagcttctcagaggtggagggggagtttgtgttc
gcccgatccatcgactccgacaacaccgacaccattgcagagttcctggagcagtctgtc
cgagactcctgcgaaggcctaatggtgaagactctggagaaagatgccacctatgaaatt
gccaagcgctctcataattggctgaagctgaagaaggactatctggaaggggttggcgac
acagtggacctgtgtgtgatcggtgcctacctcggaaaaggcaagaggacgggcacgtac
ggtggcttcctgttggcctgctacgacgaggaaaacgaagagttccagtctgtctgcaag
atcgggacaggcttcaaggatgaagatctggagcagcattacaagttcttaaaggagcac
attctccagaagccccgcgcctactaccgcttcgaccagtcggcagagcccgacgtttgg
ctggatgccgtgcaggtttgggaggtgaagtgcgccgacctgtcactgtcgcccgtctac
aaggctgccatgggactggtggatccagaaaagggcatttctctgaggttcccccgcttc
cttcggatcagagacgacaagaagcccgaggacgccacaagcggagctcagatcgccgat
ttgtacaagaagcagcagcagatccagaatcagggagagaaagttgacccggaggactac
tactga
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