Acanthopagrus latus (yellowfin seabream): 119012876
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Entry
119012876 CDS
T08233
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119012876 (ddx1)
03016 Transfer RNA biogenesis [BR:
alat03016
]
119012876 (ddx1)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119012876 (ddx1)
Spliceosome [BR:
alat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119012876 (ddx1)
Transfer RNA biogenesis [BR:
alat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119012876 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
119012876
NCBI-ProteinID:
XP_036942967
EnsemblRapid:
ENSALTG00010026298
LinkDB
All DBs
Position
22:18687295..18694283
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAIFNSWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKGITKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGNDLGLAFELPQHVKNQPFFASCVLKNAELKF
NFGGEDFKNPPKSGFVALNQASEAHQVKSSQTGTAKVSEVKASSNAPKALIIEPSKELAE
QTLNVVKQFKKYVENPKLRELLVIGGVAAKEQLAALEQGIDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDRIWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYAVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGHQF
SCVCLHGDRKPNERKTNLERFKRKEVRLLVCTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDDFDGKVTYGQRRALGGGNYKGHVDALAPTVQELANLER
EAQSSFLQLGFLQNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgagatgggcgttatgcctgaaatcgctcaggctgtggaagagctg
gactggctactacccactgacatccaggcagagtctattccccttattctcggtggagga
gatgttctcatggcggcagaaaccggtagtggcaaaacaggtgccttcagtatcccagtg
atccagattgtgtatgagaccctgaaggatcagcaggagggcaagaagggcagagctgct
gtcaagactggaggagccattttcaacagttggcagatgaatccctatgaccgcagtaca
gcctttgcaatcggtccagacggattgtgctgccagagccgggagtttaaagagtggcat
ggctgtcgctccacaaaaggcatcaccaaagggaagtactactacgaggtcacctgccat
gaccagggtctgtgtcgcattggttggtctaccagtcaggcagctcttgacttgggaact
gataagtatggttttggtttcggtggaactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgacaccattggatgctacctggatctggacaag
ggccaaatttccttctctaaaaatggtaatgacctgggtttggcttttgagctcccgcaa
catgtcaagaatcagcccttttttgcctcctgtgtgctcaagaatgcagagctgaagttc
aactttggaggagaagacttcaagaatccccccaagagtggctttgttgccctgaaccag
gcctccgaggctcaccaagtaaaatcctctcagacaggcactgccaaagtgagtgaggtg
aaggcctcatccaacgcaccaaaagctctgatcatcgaaccatcaaaagaattggctgaa
cagaccctcaacgttgtcaagcagtttaagaaatatgtggaaaaccccaaactgagggaa
ctgctggtgattggtggtgtggctgccaaggagcagctggctgctctcgaacaggggatt
gacatcgtggtgggaacacctggtagactggacgatctcatatccactgggaagcttagt
ctgtcacaagtccgctttctagtcctggatgagtgtgatggcctcctgtctgcaggctat
acagactttatcaacagaatccacaaacaaatccctcaggtcacctctgatggcaagaga
ctgcaggtgattgtttgttcagccacactgcattcctttgatgtgaagaaattgtccgag
cgcataatgcactttcccacttgggtggacctgaagggagaggattctgtccctgagact
gtccaccatgtggtagtacctgtcaatcccaagagcgatcgaatctgggagcgtctgggc
aagaaccacatccggacagatgaagtccatgctaaagataacaccagaccaggagcaaat
tctgcagaaatgtggtcagaagccatcaaggtgctgaagggcgagtatgcagtgagagcc
atcaaagagcacaagatggaccaggccatcatcttctgtcgcaccaagatcgactgtgac
aacatggagcagtactttatccagcaaggaggaggtccggacagtaagggccaccagttt
tcctgtgtttgtctccatggtgatcgtaagcccaatgagcggaaaactaacttggaacgc
ttcaagagaaaagaagtgaggctcctggtctgcacagacgttgctgccagaggaatcgac
atccacggggttccttatgtgataaatgtcaccctgccagatgagaagcagaactatgtc
catcgtatcggcagagttggaagagccgagagaatggggctggcgatctcactggttgcc
atggagaaggagaaggtgtggtaccacgtttgcccgaaccgaggcagaggctgctacaac
acccggctgaaggaggatggaggttgcaccatctggtacaacgagaaagagctcctgtca
gaaattgaggagcatctaaagtgcaccatcacccagtgtgagccggacatcaaagtacct
gtggatgactttgatggaaaggtcacatatggtcaacgcagggctttgggaggtggtaac
tacaaaggtcacgtggatgctctggccccgacagtccaggaactggcaaatctcgagagg
gaagcccaaagttccttcctccaactgggattcttgcaaaaccaacttttcagagccttc
tga
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