Acanthopagrus latus (yellowfin seabream): 119015580
Help
Entry
119015580 CDS
T08233
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119015580 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alat03400
]
119015580 (lig4)
Enzymes [BR:
alat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119015580 (lig4)
DNA repair and recombination proteins [BR:
alat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119015580 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119015580
NCBI-ProteinID:
XP_036947585
EnsemblRapid:
ENSALTG00010021740
LinkDB
All DBs
Position
24:complement(7529411..7534238)
Genome browser
AA seq
910 aa
AA seq
DB search
MEGTSKSDDAAQPSVAAQVPFLHLCNTLEKIQKAKLRPDKSKILGDFIGSWRNFHSALHK
DNPNSTDSFYPAMRLIVPSYERDRMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSEGNLSVKEVNDFLDSVAINNATKKKDLVRKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHLDASELYNVNTDLNKVCQQLHDPSVSL
SEVSIGLFSAFKPMLAAVANLRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGASPLEGSLTPYIHNVFKSNVINCILDGEMMAYNLTTENFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNDRKLGKETLKKRLEILQTVFTPVKGRIHLVPKSDARTMQEVV
NALNDAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYMDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
SSILCGTEKPEVYIEPCNSVIIQVRAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLRIDDDSPQKKKRKLAAKPKKVIGIIDHFKPQDLTGVKKET
DMFEDVEFCILNGTEDHPKAELERGVARCGGIVVQNPGPDTYCVVAGVENMRVKNLISSD
QHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRE
VFARISGADVSTAVDVCQVEQRYGWEDLPTSIFRPFKVYMDRFADIGEPQTALPATCLDV
RALEFRYHGGRVVERLEEGVSHVVIAEETRLVDLRTLRRRFRKKFKIVRDSWVTDSITAG
YLMNDTDYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaagggacttccaaaagtgatgatgcagcacagccctctgtcgccgctcaggttcct
ttccttcacctgtgtaatactttagagaagatccagaaggctaaactccgtccagacaaa
tcaaagatccttggcgacttcattggatcatggaggaattttcattctgccctccacaaa
gacaaccccaacagcacagattctttctacccagcaatgcgcctcatagtcccctcttat
gaacgagatcgtatggcgtacggcatcaaagaaagcatgttggctaaactctacatcgat
gtgttaggcctcccaaagaatggcccggaagctaataaactgctgaactaccgtgctccg
actacatcccaaggagaagccggagactttgccggcatggcgtacttcgtcctaaagaaa
cgttgcaccagcgaggggaacctcagcgtcaaagaagtcaatgacttcctggactctgtg
gcgatcaacaacgccaccaagaagaaggatctcgtgagaaagagtctgctgcacctcatc
acccagagctcagccctcgagcagaaatggctcatccgaatgattctgaaggacatgaag
ctcgggatcagcaaagaaactgtcctccaggtcttccatttggacgcttctgagctctat
aatgtcaacacggacttgaacaaagtgtgccagcagctccacgacccctctgtgtcttta
agcgaggtctctatcgggctcttctccgctttcaagccaatgctggcagctgtggcgaac
ctgcgcaatgtggagaaacagatgggaaacagccctttttatattcagaccaagcttgac
ggggagcgtatacagctacacaaagacggggacgtgtacaagtacttcagccggaacgcc
ttcgaatacacccagcagttcggagcatccccactggagggctcgctgacaccgtacatc
cacaatgttttcaaaagcaatgtcataaactgtatcctcgacggcgagatgatggcgtac
aacctgaccaccgagaacttcatgcaaaaaggaagcaaattcgacatcaagagactcatg
gacgactcagagctacagacctgcttctgtgtgttcgatgtgctgttagtcaacgaccgg
aagcttggcaaggaaacgctgaagaagcgccttgagatccttcagacggttttcaccccg
gtcaaggggaggatacacctggtgccaaagtccgatgcaaggaccatgcaggaggtggtg
aacgccctcaacgacgccattgacaacagagaagaggggatcatggtgaaggatccttca
tccgtctacaagcctgacaagcgcggagagggatggctgaaaataaagccagaatacatg
gacgggttgatggatgagcttgacctgctgattgttggtggatactgggggaaagggaga
aggggtggcatgatgtcccatttcttgtgtgctgttgcagaagcgccaaagcctggtgag
aaacccacagttttccacaccctctgccgcatcggctctggatacaccatgaaggagttg
tacgacctcggtttgaagctcgccaaacactggaaagtctacaggaaaaatgacccaccg
tcatccatcttgtgcggcacagagaaaccagaagtttacatcgagccctgcaactccgtc
ataatccaggtcagggcggctgaaatagtcggaagcgacatgtacaaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgact
ctggcagagctggatcagtttcgcagcaaggcgtcggggaagctcgcctcgaggcacctc
cgcatcgacgacgattcaccacagaagaagaagcgcaagctggcggccaaacccaagaag
gtgatcgggatcattgaccactttaagcctcaggacctcaccggggttaaaaaggagaca
gacatgttcgaggatgtggagttctgtatcctgaatggcacggaggatcaccccaaggct
gagctggaaaggggcgtggccaggtgcggaggtattgtggtccagaacccaggaccggac
acctactgcgtggtcgccggcgtggagaacatgcgcgtgaagaacctgatctcgtccgac
cagcacgacgtggtgtgggccgcctggctgctggagtgcctggaccagaaggaagtggtc
ccatggcaaccgcgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacagctatggcgacagctacttcgtggacacagacgagcagcagctgcgggag
gtgttcgcccggatcagcggcgcggacgtgtctacggccgtcgacgtctgccaggtggag
cagcgttacggctgggaagaccttcccaccagcatcttcagaccctttaaggtttacatg
gacagattcgcagacataggagaacctcaaaccgccttacctgccacctgtttggacgtc
agggcgctggagtttcgctaccacggagggagggtggtcgagaggctggaggagggagtc
tctcacgtcgtcatcgcagaggaaacaagacttgtggatttaaggacgctgaggcgtcgc
tttaggaagaagtttaagattgtaagagactcgtgggtgactgactcgatcacagcaggc
tacctgatgaatgacaccgactacttagtttga
DBGET
integrated database retrieval system
