Acanthopagrus latus (yellowfin seabream): 119031486
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Entry
119031486 CDS
T08233
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119031486 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alat03041
]
119031486 (ddx46)
Enzymes [BR:
alat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119031486 (ddx46)
Spliceosome [BR:
alat03041
]
Complex A
U2 snRNP components
U2 related factors
119031486 (ddx46)
Complex B
119031486 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
119031486
NCBI-ProteinID:
XP_036975890
EnsemblRapid:
ENSALTG00010002991
LinkDB
All DBs
Position
13:23863357..23876918
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AA seq
1068 aa
AA seq
DB search
MGRESRYVGNIRHYRKRSASRGRSGSRSKSRSPDKRSKKDERDRDRSRRERSRSRDRRRS
RSRDRKRARRSRSRERRRSRSRERRRSGSRTRARRSRSGSPSKSRREEKSRSREKDSVDP
VSDKKKIKEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELE
EMKQGKKWSLEDDDDDDEDISAPMEADDDEDVEGKGDLKEKEIKEEKTEDGEKEKETPME
QQAEEDDVDPLDAYMEEVKQEVKKFNMGGVRGNDKKGAMTVTKVVTVVKTKKGPHTHKKK
GELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYEQYRKNFYVEVPE
LTRMTQEDVNAFRLELEGIIVKGKGCPKPIKTWVQCGVSMKILSAMKKHGYEKPTPIQAQ
AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQI
TKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLR
RVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIEV
QVGGRSVVCSDVEQHVLVIDEDKKFLKLLELLGHYQEKGSVIIFVDKQEHADALLKDLMK
ASYPCMSLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYE
DYVHRAGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQLWASFKDQQK
AEGKTIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMF
NSKKRVKDLSAPGSATGSTGTVTSTASVPGGLPGLGPTSAGNIQKLEMAKRLALKINAQK
NLGAEAQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAA
EQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGE
RKIYLAIESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgagtcgaggtatgtcggaaatatcagacactacaggaagcgctcggcgtct
cgtggaaggtcaggtagccgatcaaagagtcgctccccggacaaacgctccaagaaagac
gagcgggaccgagaccgaagcaggagagagcggtcacggagccgggaccgccgcaggtcc
cggtccagagacagaaaacgagccagacgctccaggagcagagaaaggaggaggtccagg
agccgagagaggaggaggtctggcagcaggacccgagcaaggaggtcccgatctggtagc
cccagcaagagcaggagagaggaaaagtcaaggagcagagagaaagacagcgttgatcct
gtatctgacaagaaaaagattaaagaggagaaagaggatgagaaagtcgaagatcaagac
tttgaccagaacaagctggaggaggagatgaggaagcggaaggagcgtgtggagaagtgg
agggaagagcagaggaagaaggccatcgaaaacatcggcgagatcaagaaagaactggag
gagatgaagcagggcaagaagtggagcctggaggatgatgatgatgatgacgaggatatt
tcagctccaatggaggccgacgacgatgaagacgtggaaggaaagggggacttaaaagag
aaggagataaaggaggaaaagacagaggatggtgagaaggagaaggagaccccaatggag
cagcaggccgaggaggatgatgtggatcctctggacgcctacatggaggaggtgaaacag
gaggtgaagaagttcaacatgggaggcgtaagaggaaatgataagaaaggagcaatgaca
gtaactaaagtggtgacagttgttaaaaccaaaaaaggaccccacactcacaagaagaag
ggtgagctgatggagaatgaccaggatgctatggaatactcatcagaggaggaggaggtg
gatctgcagacggctctgacgggcttccagaccaaacagaggaaggtcctcgagcctgtc
gaccacgggaagatccaatacgagcaataccgaaagaacttctacgtggaggtccccgag
ctcaccaggatgactcaggaagatgtgaatgcattcaggctggaactggaagggattatc
gtcaaagggaagggctgtcccaaacccatcaagacctgggtgcagtgtggagtgtctatg
aagatcctcagtgctatgaagaagcacggctatgagaagcccacccccatccaggctcag
gcaatccctgctatcatgtctggccgagacctcatcggcatcgctaagaccggcagcggg
aaaaccatcgccttccttctgcccatgttccgacacattatggaccagaggcctctagag
gagtctgagggaccaatctcggtaatcatgactccaaccagagagttggctctgcagatc
accaaagagtgtaagaagttctctaagccgcttggactcagagtggtgtgtgtttatgga
ggcacgggtatcagcgaacagattgctgagctgaagagaggagctgagataattgtgtgc
acaccgggaagaatgattgacatgttgggggccaacagcggtcgggtcaccaacctgcgc
agagttacatatgtggtgttggacgaagcagacaggatgtttgacatgggcttcgagcca
caggtgatgcgtattgtggacaacgtgcgtccagaccgtcagacggtcatgttttcggcc
accttccccagagccatggaggcgctggctcgtaggatcctggccaagcccattgaggtc
caggtgggaggccgcagtgtcgtctgctctgacgtcgaacagcatgtgctggtgattgat
gaggacaagaagttcttgaagctactggagctgcttggtcattaccaagaaaaaggttca
gtcatcatctttgtggacaagcaggagcatgcagacgcactattgaaagatctgatgaaa
gcctcgtacccctgcatgtccctacatggaggaattgaccagtacgacagagacagcatc
atcaatgactttaagaatggagcatgtcgcctgatggttgccacttctgtggcagccaga
ggtctggacgtcaagcagctgatcctggtggtcaactacaactgtcctaaccactatgag
gactacgtccacagagccggacgcacaggccgagcaggcaacaagggttatgcctacacc
tttatcactgaggatcaggtacgctatgctggtgacatcatcaaagccttggagctgtcc
ggctctcctgtcccacccgaactggagcagctttgggcctccttcaaagaccaacagaaa
gcggagggtaagaccattaagagcagcagcggcttctcaggaaaaggtttcaagtttgac
gagacagagcatgccttggccaatgagaggaagaagctgcagaaagctgctcttggactg
caggactctgatgacgaggacggagccctggatattgaggagcaaatcgagagcatgttc
aactctaagaagagggtgaaggatctgtctgctcctgggtcagccaccggctctacagga
accgttacctcaactgcatctgttcccggagggctgccaggcctcggacccacgtctgca
ggaaacatccagaaactggagatggccaagaggctggcgctcaagatcaacgctcagaag
aacctgggcgccgaggctcaggacgtgatgcagcaggccaccaacgcaatcctgcgtgga
ggcaccattatgaccccctctgtgtcagccaagaccatcgcggagcagctggcggagaag
atcaatgccaaactgaactacacccctgtggagaagctggaggaggagcggcaggcggct
gaacaggctgagaccgtcaagagatacgaagaggagctggagatcaacgacttccctcag
acggccaggtggaaggtgacttctaaagaggctctgcagaggatcggtgaatactctgaa
gccgccatcaccatcagaggaacctatttccctccaggcaaagagcccaaggagggagaa
cgcaagatctacctggctattgaaagtgcaaatgaactggctgtacagaaagccaaaaca
gagattacacgtttaatcaaagaggagctcatcagattacaaaattcgtatcagccgacg
agcaaaggccggtacaaagtgttgtag
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integrated database retrieval system
