Acinetobacter lactucae: OTEC02_10095
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Entry
OTEC02_10095 CDS
T05220
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alc
Acinetobacter lactucae
Pathway
alc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OTEC02_10095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alc03400
]
OTEC02_10095
Enzymes [BR:
alc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OTEC02_10095
DNA repair and recombination proteins [BR:
alc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OTEC02_10095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARD29092
LinkDB
All DBs
Position
complement(2140501..2143962)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLFKEIAIQHSSLLVVVARNNQHVAQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGVLLISASTLAQRVAPY
SWVLGEHFDIRVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQEAPI
RIDLFDDEIDTLKFFDPETQRTTTALKSFTVLPAKEFPLKEARSIFRDRYSELFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKTQMQAQSTLTTYLPKNCIVITTDDVDTDLTSFW
KEVFRRYEDRRHNADQPILPPDELFIAPNHLLSALNQFPRMLVSAEAVEEKAGALNLKVE
QPPKLPVDPKKDKPFAVVKKYIDEANHPVLLVAESAGRRESLRDGLRASLGDIPNVDSFE
QFQKSQFAIAITNAPLDRGLLLTDQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEEAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFGFEVDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHMKNIEDLAEGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTEASIKEAILRELLRGGQVYFLHNEVDTIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDE
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGVPPQSVKHLFSVHQIRLKAEQLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKHPTYYRMEGGHRLKVMVQLEEQEKRIQFI
NDLLAKLLNELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttacaacagctcaaagccggtgaaaagcgt
tgggtagggtcgttattaggttcatctgctgcattattattcaaagaaattgcgattcag
cattcatctttgctcgtggtggtggctcgaaataaccaacatgttgctcagttagaaagt
gaacttgaattttatggcataaaaccgacaattttccctgattgggagattttgccgtat
gaccgtttgtcacctcatcaagatattgtttcggaacgtctcgcaattttatctaatatg
ccgcaaaagggtgtcttactcatttcagcgagtactttagcccagagagttgcaccatat
tcttgggttttaggtgagcattttgatattcgtgtagggcaaaaatttgatttagaacaa
cagaagttacggttagtacaagcaggctatcatttagtagacacggtttatgaccatggt
gagtttgccgtacgtggcagcattatggacatttttgcatcaggacaggaagcacctatc
cgtattgacctgtttgatgatgaaattgatactttaaaattctttgatccagaaacgcaa
agaacaacaactgctttaaaaagttttacagtcttaccagcaaaagagtttccactaaaa
gaagctcgttcaatttttagagaccgttactctgaactttttccgaccgcaaatcctaag
aaaaaccccatttatcaagatgtgcttgatggaattgcatctccgggaattgagttttat
ttacctttattttttgataaaacccaaatgcaagctcaaagtacactaacaacgtattta
ccaaagaattgcattgtaattacaactgatgatgtagatactgatttaaccagtttttgg
aaagaagttttccgcagatatgaagatagacgtcataacgctgatcagccaattctccca
cctgatgagttatttattgcaccaaaccacttgcttagtgccttaaatcagttcccacgt
atgcttgttagcgctgaagcagttgaagaaaaagctggggctctaaatcttaaggttgag
caaccacctaagttgccggttgatccgaaaaaagacaaaccatttgcggtagttaaaaaa
tatattgatgaagcaaatcatcctgttttattggttgcagaaagtgctggtcgtcgtgaa
agtttaagagatggtttgcgtgccagtctgggagatattcctaacgtagatagttttgag
cagttccagaaaagtcagttcgcgattgcgattactaatgcgccattagaccgtgggtta
cttttaaccgatcaattgtctgttatttcagaaaatcagttatatgaacatcgggtagtc
caacgtcgtcgtaaacgtcagcaagaagtttcagaagagttcttaattcgtagtttgacc
gaattaagtataggtgctcctgttgttcatattgaccatggcgtagggcgttatgctggg
ttaattactttagcaattgaagggcaagattatgaattcttgcaactagactatgctgaa
gaggcaaaagtttatgttcctgtaacgaatttacatcttattagtcgttacagtggtgga
gatccggacttagcaccattacataaaattggaactgatgcgtggagtaaggcgaaacgt
aaagctttagaacaaattcatgatgttgcagcagagttgttacatatacaagcacgtcgt
cagtcaaaaccaggctttggttttgaagtcgatcaatcgctttatatgcaatttgcgagt
ggatttgcgtatgaagaaacacttgatcaggccaatgctattgaagcgacgctttatgat
atgcaacaagctaaaccgatggaccgacttgtttgtggtgatgttggttttggtaaaact
gaagttgcgatgcgtgcagcatttgttgcggtacaaaatggtaaacaggttgctgtttta
gtgccgacaacattacttgctcaacagcattatgagtcttttaaagaccgctttgccgat
tggcctgtgcgtatcgaagtactatcacgctttggttcaaataaaacgcatatgaaaaat
attgaagaccttgctgaaggtaaagtcgatattgtggtgggtacccataaacttttacaa
gaaaatgtacagtttaaagatctaggattaatggtggtcgacgaagaacaccgttttgga
gtgcgtgataaagagcgtattaaagcattacgtgcagatgttgatatgttgacacttaca
gcaacaccaattcctcgtacgcttaatatggctttttcgggaatgcgtgatttatctatc
attgctactccgccagcccgtcgtttagctgttaagacctttgtacaagaacataccgaa
gcgtctattaaagaagccattttgcgtgaattattacgtggtggacaagtatatttcttg
cacaatgaagttgatacaattgaaagagctgctgaaaatattcgtgtgcttgtgcctgaa
gctcgtgtagcagtggctcacggacaaatgagggaaagagaacttgagcaagtcatgcaa
cagttctatcacaaagaatacaatgtattggtatgctcaaccattatcgaaaccggaatt
gatgttccaaatgccaacaccattttgatcgaaagagctgacaaacttggtctagctcaa
ttacaccaactgcgtggccgtgtagggcgctcacatcaccaagcctatgcttatttacta
gttccttcgataaagcatttaaaaggtgatgcagaaaaacgtctagatgcaatccaacgt
gcttcaactctcggtgctggttttatgctggctacagaagatttagaaattcgaggtgca
ggcgagctgttaggtgagcagcaaagtggttcaatgcaggcaattggatatagcttgtat
atggaaatgcttgaaaaagccaccaaggcaattcaacaaggaaaaacgccgaatttcgat
gcaccgttatcattaactgcagaaattaatttacacattcctgcactgattccagatgag
tatctaggtgacgtgcatcagcgtttattattctataagcgtattagtaatacagatacc
caagaaaaactcgacaatatccgtatggaactgattgaccgttttggagttccaccgcaa
tcagttaaacacttatttagtgttcaccaaattagactgaaagctgaacagctaggtatt
actaagattgatattaatactcaaggtggcaatattgaattctcgcctgatacgcctgtt
caagccattagtattattcaacttatgcaaaaacatccaacctattatcgtatggaaggt
ggtcatcgcttaaaagtgatggttcagcttgaagaacaggaaaaacgaattcaatttatt
aatgatttgttagcgaaattattgaatgaattacatgcttaa
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