Alcanivorax sp. ALC70: ASALC70_02510
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Entry
ASALC70_02510 CDS
T09695
Symbol
ligd
Name
(GenBank) Bifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
alca
Alcanivorax sp. ALC70
Brite
KEGG Orthology (KO) [BR:
alca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ASALC70_02510 (ligd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alca03400
]
ASALC70_02510 (ligd)
Enzymes [BR:
alca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ASALC70_02510 (ligd)
DNA repair and recombination proteins [BR:
alca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ASALC70_02510 (ligd)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UWN50289
LinkDB
All DBs
Position
complement(2346476..2347396)
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AA seq
306 aa
AA seq
DB search
MTDATLDVDGRAVPFSHPDKVLFPDDGLTKADLADYYRRVAPVMLPHLAERPLTLHRFPD
GIGEDGFYQQNRGDHFPDWLPGRRLDHGGATGVVHHILCQRPADLVYLAGQGTLTLHAWL
SHADRPRRPDQLVFDLDPPGDDFEPVRQAARQVRDALRQAGLTPFLKTTGSRGLHVVAPL
KPVADFDRVRRACRRLSDHLAARHPDQLTTEQRKNKRRGRLYLDIQRNAFGQTAVAPYAV
RARPGAPVATPLDWHELDDPALGPRRYTLGNLFRRLGQKDDPWAGMARHAADPAVLENAL
EEWDQG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgccaccctggatgtggacggccgcgccgtgcccttctcccacccggacaag
gtgctgttcccggacgacggcctgaccaaggcggacctggccgactactatcgccgggtg
gcgccggtgatgctgccgcatctggccgagcggccgctcaccctgcaccgcttcccggac
ggcatcggcgaggacggcttctaccagcagaaccgtggcgaccacttcccggactggctg
ccaggccggcgcctggaccatggcggcgccaccggcgtggtccaccatatcctgtgccaa
cgacccgccgacctggtctacctggccggccagggcaccctcaccctgcacgcctggctc
agccacgccgaccgcccgcgccggccggaccagctggtgttcgacctggacccgcccggc
gacgatttcgagccggtacgccaggccgcgcgccaggtgcgcgacgccttgcgccaggcc
ggcctgaccccgtttctgaaaaccaccggctcccggggcctgcacgtggtggcgccgctc
aagccggtggccgatttcgaccgggtgcggcgcgcctgccgccggctgtcggaccatctg
gcagcgcgccacccggaccagctcaccaccgagcagcgtaagaacaaacggcgcggccgg
ctctatctggacatccagcgcaacgcctttggccagaccgccgtggccccctacgcggtg
cgcgcccgccccggcgcgccggtggccacgcccctggactggcacgaactggacgacccg
gccctgggcccgcgccgctacaccctcggcaacctgttccgccggctcggccagaaggac
gacccctgggccggcatggcccgccacgcggcggacccggcggtgctggaaaatgccctg
gaggaatgggaccagggctaa
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