Alteromonas sp. Mac1: AV939_07410
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Entry
AV939_07410 CDS
T05687
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ale
Alteromonas sp. Mac1
Pathway
ale03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AV939_07410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ale03400
]
AV939_07410
Enzymes [BR:
ale01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV939_07410
DNA repair and recombination proteins [BR:
ale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AV939_07410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
SecA_DEAD
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMJ86425
LinkDB
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Position
1755838..1759344
Genome browser
AA seq
1168 aa
AA seq
DB search
MTATLLSLPLPTQKKSASVQDHKQWGQLQGSSAALCITQAQAQYNGPIVLVTADTPSALK
LEKELAFFMPSNKAEQPNVPITVFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQVNGIF
IVPVNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRG
SIIDLFPMGSDKPFRIDLFDDEVDSIRFFDTETQRSGDAVEKIKLLPAREFPTDKESITL
FRQRFLEKFDANNASESVFSQVTKGTMPSGVEYYLPLFFDKTATLFDYLHPKSVLLLHGE
VQDASEFFWADIQERYEQHRYNPARPLLPPEDLFLPINTLFGEIKQWPRVSLSKEIIEEK
PGSFNLGCDKLDDIAINTQKKVPAEQLIATVNNAKKRGAKVLFCAETQGRREGLLTVLQK
AGIKPKAAESFNSFVSASDNIGITVGMVENSFNWRSDSGELLFITETELLGHKVSQRRLR
DKRTATDESAIIRNLAELTTGQPVVHLDHGVGRYIGMQTLDAGGVTTEYLCIEYAKQAKL
YVPVASLHLISRYTGGDADHAPLNSLGTDAWSKAKQKAAEKVRDVAAELLDVYARRAAKP
GFAYNIDWDDYQKFSDSFPFEETPDQAQAIAAVIHDMGSPQAMDRLVCGDVGFGKTEVAM
RAAFLAANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFVSAKGQKETMQRL
ADGKVDIVVGTHKLLSNDIKFSDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPI
PRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKAIIREAIMREILRGGQVYFLHNEV
DTIARTAEEIAEIVPEARIAMGHGQMRERELENVMSDFYHQRYNVLVCTTIIETGIDVPS
ANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAISKLEDL
GAGFALATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDRAVTSLKEGKEPSLDDAMA
GHTEVELRIPALLPDDYIADVNTRLSLYKRLASCKNQDDIDEFQVECIDRFGLLPEPAKN
LVEVAEIKIKAEAIGVLKVDLSAQGGTIEFTDTTKVDPGYIIQLVQTKPNTFKFEGSQKL
RLVKQTDTAKARIAFISDIIADLAKESR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaactcttttatctttgcctttgccgacccagaaaaaatccgcctctgtgcaa
gaccacaagcaatggggtcagttacaaggcagcagcgccgcactgtgcatcactcaagca
caagcccaatacaacggccctattgtgctagtaacagccgacacaccttcggcgttaaaa
ctagaaaaagagttggcgttttttatgcccagcaataaagctgagcaaccaaatgtacct
attacggtatttcccgattgggaaaccctgccctacgattcgttttctccacaccaagat
attgtctcgcagcgcttagaaactttatttcgctttacccagcaggtaaatggtattttc
attgtgccggtaaacaccttgatgcaacgtttggcacctaccgactacctcgcaaaatat
ttgttgatgctgaataagggagacacccttgatagagaccaattcagacgcaacttagaa
caagcgggctacttacacgtaagccaggtaatgagccacagtgaattttcggtgcgcggt
agcattatcgatttattccccatgggtagcgacaagccgtttcgtattgatttgttcgac
gacgaagtagactctattcgctttttcgataccgaaacccaacggtctggcgatgcggtt
gaaaaaataaagctgttacccgcacgggaattccctaccgacaaagaatctattaccctt
ttccgtcagcgctttttagaaaagttcgatgcgaacaacgcctcagaatcggtgttttct
caagtcacaaaaggcaccatgccaagcggcgttgaatattacttgccgctgttttttgat
aaaaccgctactttgtttgattacctgcaccctaaaagtgtgctgttgttacacggcgaa
gtacaagatgccagcgagtttttctgggcagacattcaagagcgttacgaacaacacaga
tacaacccagcaaggcctttactgccacctgaagatttatttttacctataaataccttg
ttcggcgaaattaaacagtggccgcgtgtatccctgtcaaaagaaatcattgaagaaaag
ccgggcagtttcaacttaggctgcgataagcttgacgatattgctattaacacccaaaag
aaagtaccggctgaacaattaattgccacggtgaataatgccaaaaagcgcggtgctaaa
gtgctattttgcgcagaaacccaaggccgccgtgaagggctgcttaccgtattacaaaag
gcgggcattaagcctaaagcggctgaatcgttcaactcgtttgtgagtgccagcgacaac
attggtattaccgtaggcatggttgaaaatagctttaactggcgaagtgatagcggcgaa
ttgctgtttatcaccgaaaccgagctattaggccataaagtaagccagcgtaggcttcgc
gataagcgtacggctaccgacgaaagtgccattattcgtaatttagccgagcttactacc
ggtcagcccgttgtgcatttagatcatggtgtgggccgttacattggcatgcaaacccta
gatgcaggcggcgttaccactgaatacttgtgcattgaatacgccaaacaagccaagctg
tatgtgcctgttgcgtcgcttcacctaatatctcgttataccggcggcgatgccgatcac
gcaccgctaaattcacttggtactgatgcatggagcaaagcaaaacaaaaagcggctgaa
aaagtacgcgatgtggccgctgaattacttgatgtatacgcacgacgtgccgcaaagcca
ggctttgcttacaatattgattgggacgactaccaaaaattctccgacagcttcccgttt
gaagaaacgccggatcaggcacaagctattgcggcggttattcatgacatgggtagccca
caagccatggacagattggtatgtggtgacgtaggtttcggtaaaaccgaagtcgccatg
cgtgcggcattcttagccgcgaaccaaggcaaacaagtggctattttggtgcccactacc
ctacttgcccaacagcatcacgagaactttaaagatagattcgccgcatggccgtttgaa
attgaagtcatgagccgattcgttagcgctaaaggccaaaaagaaaccatgcagcgcctt
gccgatggcaaggtagatattgtagtaggtacgcataagttgctgtcgaacgatattaaa
ttcagcgacttaggcttagtgatcattgatgaagagcatcgcttcggggtgcgtcaaaaa
gagaagctaaaatcccttcgcgccgatgtagatattcttacccttaccgctacgcctatt
cctagaaccctgaatatggctatgtcgggaatgcgagacttatcgattattgctaccgcg
ccagcaagacgtttatcaattaaaacctttgtacaacaacgcaataaagccatcattcgt
gaagctataatgcgtgaaattttacgtggtgggcaggtgtacttccttcacaacgaagta
gataccatagccagaactgccgaagaaattgccgaaattgtacctgaagcgcgtattgcc
atgggccacggccaaatgcgcgaacgcgaacttgaaaatgtaatgagcgacttttaccac
cagcgctacaacgtgttggtgtgtaccaccattattgaaaccggtattgatgtgcccagt
gctaataccatcatcatggacagagccgatcacttaggcctagcccaattgcaccaattg
cgtggccgtgtggggcgttcacaccaccaagcctacgcttatttacttacgccgcatcct
aagcgtatgaccaaagacgcagctaagcgactagacgctatttctaaacttgaagattta
ggggcaggttttgcgctagccacccacgaccttgaaattcgtggcgcaggtgaactattg
ggcgatgaccaatctggccaaattgccagtatcggctttagcctttacatggatatgcta
gatagagcagtaacatcactgaaagaaggcaaagagccttcgctagacgatgccatggca
ggccacacagaagttgaacttcgtattcctgccctactgcctgatgactatattgccgac
gtaaacactaggttatcgctatataaacgcttagccagctgtaaaaaccaagacgatata
gacgaattccaagtagaatgtatcgaccgcttcggtttattgcctgaacccgctaaaaac
ttagtagaagtggcggaaataaaaataaaagcagaagctataggcgtgcttaaagtagac
ttgtcagcacaaggcggtaccatagagtttacagataccaccaaggttgaccctggctat
attattcagcttgtgcaaaccaagccaaatactttcaaatttgaaggcagccagaaacta
cgattagtaaaacagactgataccgcaaaagcgcgcattgcgtttattagcgatatcatt
gccgaccttgcaaaggagtcgcgataa
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