KEGG   Agrobacterium leguminum: CFBP4996_24405
Entry
CFBP4996_24405    CDS       T09300                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aleg  Agrobacterium leguminum
Pathway
aleg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aleg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CFBP4996_24405 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aleg03400]
    CFBP4996_24405 (ligD)
Enzymes [BR:aleg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFBP4996_24405 (ligD)
DNA repair and recombination proteins [BR:aleg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CFBP4996_24405 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase Ripply
Other DBs
NCBI-ProteinID: WFS69123
LinkDB
Position
Linear:2161458..2163950
AA seq 830 aa
MGLQTYNAKRSFDKTPEPKGTRAEAQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGTWQPISDARKGYRKGH
LEFELDGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGGADILEERPESVKTGR
SVEEVAAKPKDTWNSKTVSKKVVASASGRKQAHALPKGARKLAMPSFVPPALATLKPKPP
DGSRWLHEIKFDGYRLQARVDQGKIKLLTRSGLDWTEKFGRAVTGALTALPVETVLIDGE
IVVERDNGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGSDLRGAALSERKALLEKLLPA
GDPHLRYSQHFEESGALVLDHACRLSLEGVISKVRNSKYVSGRKGEWVKSKCSMRQEFVI
GGYTVSSTSDHAIGSLALGVYENGKLRHVGRVGTGYTGELAEMLLGRLKPLERKDSAFDG
RLTALARRDLHFVKPELVAEVEFRAWSADGNLRHASFRGLREDKPAAEIEREEKAVSDTQ
APQSKIKFTHPDRLYWPEDGVTKEGLADYYAQVWRHMAPFVVNRPLALLRCPEGIEGQRF
FQKHAWRGINKAVEQIRDPKDKGGEPLIRITDFDGLMALVQSAALEIHPWGATTANWEKP
DMITMDIDPGEDVAWEEVIEAALELKWRFEEAGLAAFVKTSGGKGLHVVAPLKPQAGWAP
VKAFAKAMAADMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRGNTAVAAYSTRARPGAAI
SAPLEWSELTAEIGPTHFTVNNIGARLSALKKDPWDGFFAAAEPLPKKTR
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgggattgcagacctataacgccaagcgcagtttcgacaagacgccggagccgaagggt
acccgggccgaagctcaagggtcgagcttcgtgatacagaaacacgatgcccgccgtctg
cactatgattttcggctggaaatggacggggtgctgaaaagctgggcggtgacgcgcggc
ccgagcctcgatcccgaggacaagcgcctcgccgtgcatgtcgaggaccatccgctcagc
tatggcgatttcgagggcgtcatcccgaaaggacaatatggcggcggcaccgtgattgtc
tgggatcgcggcacctggcagccgatcagcgacgcccggaaaggttatcgcaaaggccac
ctggaattcgaacttgacggcgaaaagctcaaaggccgatggcatctggtgcgcatgcat
ggaaagcccggagaaagccgggagaactggctgctcatcaagggcgatgacgaggaggcg
aggcataagggcggcgcggatattctcgaagaacggccggaatccgtaaagaccgggcgc
agtgtcgaggaagttgcagccaaaccgaaggatacctggaattccaaaacggtatctaaa
aaggttgtcgcttctgcctccggcaggaaacaggctcatgcgctgcccaaaggcgcacgc
aaactggccatgccatctttcgtgccgccggcgctcgccacgctcaagccgaaaccgccg
gatggttctcgctggctgcatgaaatcaaatttgacggctatcgtctgcaggcgcgcgtc
gatcagggcaagattaaactgctgacccgcagcgggctggactggacggagaaattcggc
cgggccgtgacaggagcgctcacggcgctgccggtggaaacggtattgatcgatggcgaa
atcgtcgtcgaacgtgataacggcgcctcggatttctccgccttgcagcaggatctgagc
gaagggcgcagcgaccgcttcgtattctatgccttcgaccttctctatctcgatggcagc
gatctgcgcggtgcggcattgagcgagcgaaaggcgctgctcgaaaagctgctgccggcg
ggcgaccctcatctgcgttacagccagcatttcgaagaaagtggcgcgcttgttctggac
catgcctgccggctcagccttgagggcgtcatttccaaagtcaggaacagcaaatatgtt
tcgggccgcaagggcgaatgggtaaaatccaaatgctcgatgcgacaggaattcgtcatc
ggcggttataccgtctcctcgacatcggaccacgccatcggatcgctggcgctcggcgtt
tatgaaaatggtaagctgcgccatgtcggccgtgtcgggacaggttatacgggtgagttg
gcggagatgctgcttggccggctgaagccgctggagcgcaaggacagcgctttcgatggc
cggctcaccgcgcttgcccgccgcgatcttcatttcgtcaagccggaactggtggcggaa
gtggagtttcgggcatggtccgcggatggcaatctgcgtcacgcctccttccgggggctg
cgcgaagacaagcctgcagcagaaatcgaacgcgaggagaaggccgtgtccgatacccag
gcgccgcaatcgaagatcaagttcacccatccggaccggctttattggccggaggacggt
gtgacgaaggaggggcttgccgattattatgcgcaggtctggcggcacatggcgcccttt
gtcgtcaaccggccgctggcattgttgcgctgcccagagggcatagaggggcagcgattt
ttccagaaacatgcctggcgcggcatcaacaaggctgttgagcagatcagggatcccaag
gacaagggcggtgaaccgctgatccgcatcaccgatttcgatggcttgatggcgctcgtg
caatcggccgcgcttgaaatccacccttggggcgcgaccactgccaattgggaaaagccg
gacatgatcaccatggatatcgaccccggcgaggatgtggcttgggaagaggtcatcgaa
gcggcgctggaactgaagtggcgtttcgaagaggccgggcttgccgctttcgtcaagacg
tccggcggcaagggcctgcatgtcgtcgcacctttgaagccgcaggcgggctgggccccg
gtaaaagccttcgccaaggccatggcggcggatatgtcgaaggccgaaccggagaaatat
ctctccgtcgccaccaaggcgaaacggcagggccgcatttttatcgactatctgcgcaat
ggcaggggcaatacggcggttgcggcctattcgacacgtgcccggccgggcgccgccatt
tcagcgccgctcgaatggtcggaactcaccgccgagatcggccccacccatttcaccgtc
aacaatatcggcgcgcgtctttccgcgctgaaaaaagacccttgggacggcttttttgct
gctgccgagccgcttccgaaaaagacccgctga

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