Agrobacterium leguminum: CFBP4996_24405
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Entry
CFBP4996_24405 CDS
T09300
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aleg
Agrobacterium leguminum
Pathway
aleg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aleg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFBP4996_24405 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aleg03400
]
CFBP4996_24405 (ligD)
Enzymes [BR:
aleg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFBP4996_24405 (ligD)
DNA repair and recombination proteins [BR:
aleg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFBP4996_24405 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Ripply
Motif
Other DBs
NCBI-ProteinID:
WFS69123
LinkDB
All DBs
Position
Linear:2161458..2163950
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AA seq
830 aa
AA seq
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MGLQTYNAKRSFDKTPEPKGTRAEAQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGTWQPISDARKGYRKGH
LEFELDGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGGADILEERPESVKTGR
SVEEVAAKPKDTWNSKTVSKKVVASASGRKQAHALPKGARKLAMPSFVPPALATLKPKPP
DGSRWLHEIKFDGYRLQARVDQGKIKLLTRSGLDWTEKFGRAVTGALTALPVETVLIDGE
IVVERDNGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGSDLRGAALSERKALLEKLLPA
GDPHLRYSQHFEESGALVLDHACRLSLEGVISKVRNSKYVSGRKGEWVKSKCSMRQEFVI
GGYTVSSTSDHAIGSLALGVYENGKLRHVGRVGTGYTGELAEMLLGRLKPLERKDSAFDG
RLTALARRDLHFVKPELVAEVEFRAWSADGNLRHASFRGLREDKPAAEIEREEKAVSDTQ
APQSKIKFTHPDRLYWPEDGVTKEGLADYYAQVWRHMAPFVVNRPLALLRCPEGIEGQRF
FQKHAWRGINKAVEQIRDPKDKGGEPLIRITDFDGLMALVQSAALEIHPWGATTANWEKP
DMITMDIDPGEDVAWEEVIEAALELKWRFEEAGLAAFVKTSGGKGLHVVAPLKPQAGWAP
VKAFAKAMAADMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRGNTAVAAYSTRARPGAAI
SAPLEWSELTAEIGPTHFTVNNIGARLSALKKDPWDGFFAAAEPLPKKTR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgggattgcagacctataacgccaagcgcagtttcgacaagacgccggagccgaagggt
acccgggccgaagctcaagggtcgagcttcgtgatacagaaacacgatgcccgccgtctg
cactatgattttcggctggaaatggacggggtgctgaaaagctgggcggtgacgcgcggc
ccgagcctcgatcccgaggacaagcgcctcgccgtgcatgtcgaggaccatccgctcagc
tatggcgatttcgagggcgtcatcccgaaaggacaatatggcggcggcaccgtgattgtc
tgggatcgcggcacctggcagccgatcagcgacgcccggaaaggttatcgcaaaggccac
ctggaattcgaacttgacggcgaaaagctcaaaggccgatggcatctggtgcgcatgcat
ggaaagcccggagaaagccgggagaactggctgctcatcaagggcgatgacgaggaggcg
aggcataagggcggcgcggatattctcgaagaacggccggaatccgtaaagaccgggcgc
agtgtcgaggaagttgcagccaaaccgaaggatacctggaattccaaaacggtatctaaa
aaggttgtcgcttctgcctccggcaggaaacaggctcatgcgctgcccaaaggcgcacgc
aaactggccatgccatctttcgtgccgccggcgctcgccacgctcaagccgaaaccgccg
gatggttctcgctggctgcatgaaatcaaatttgacggctatcgtctgcaggcgcgcgtc
gatcagggcaagattaaactgctgacccgcagcgggctggactggacggagaaattcggc
cgggccgtgacaggagcgctcacggcgctgccggtggaaacggtattgatcgatggcgaa
atcgtcgtcgaacgtgataacggcgcctcggatttctccgccttgcagcaggatctgagc
gaagggcgcagcgaccgcttcgtattctatgccttcgaccttctctatctcgatggcagc
gatctgcgcggtgcggcattgagcgagcgaaaggcgctgctcgaaaagctgctgccggcg
ggcgaccctcatctgcgttacagccagcatttcgaagaaagtggcgcgcttgttctggac
catgcctgccggctcagccttgagggcgtcatttccaaagtcaggaacagcaaatatgtt
tcgggccgcaagggcgaatgggtaaaatccaaatgctcgatgcgacaggaattcgtcatc
ggcggttataccgtctcctcgacatcggaccacgccatcggatcgctggcgctcggcgtt
tatgaaaatggtaagctgcgccatgtcggccgtgtcgggacaggttatacgggtgagttg
gcggagatgctgcttggccggctgaagccgctggagcgcaaggacagcgctttcgatggc
cggctcaccgcgcttgcccgccgcgatcttcatttcgtcaagccggaactggtggcggaa
gtggagtttcgggcatggtccgcggatggcaatctgcgtcacgcctccttccgggggctg
cgcgaagacaagcctgcagcagaaatcgaacgcgaggagaaggccgtgtccgatacccag
gcgccgcaatcgaagatcaagttcacccatccggaccggctttattggccggaggacggt
gtgacgaaggaggggcttgccgattattatgcgcaggtctggcggcacatggcgcccttt
gtcgtcaaccggccgctggcattgttgcgctgcccagagggcatagaggggcagcgattt
ttccagaaacatgcctggcgcggcatcaacaaggctgttgagcagatcagggatcccaag
gacaagggcggtgaaccgctgatccgcatcaccgatttcgatggcttgatggcgctcgtg
caatcggccgcgcttgaaatccacccttggggcgcgaccactgccaattgggaaaagccg
gacatgatcaccatggatatcgaccccggcgaggatgtggcttgggaagaggtcatcgaa
gcggcgctggaactgaagtggcgtttcgaagaggccgggcttgccgctttcgtcaagacg
tccggcggcaagggcctgcatgtcgtcgcacctttgaagccgcaggcgggctgggccccg
gtaaaagccttcgccaaggccatggcggcggatatgtcgaaggccgaaccggagaaatat
ctctccgtcgccaccaaggcgaaacggcagggccgcatttttatcgactatctgcgcaat
ggcaggggcaatacggcggttgcggcctattcgacacgtgcccggccgggcgccgccatt
tcagcgccgctcgaatggtcggaactcaccgccgagatcggccccacccatttcaccgtc
aacaatatcggcgcgcgtctttccgcgctgaaaaaagacccttgggacggcttttttgct
gctgccgagccgcttccgaaaaagacccgctga
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