Agrobacterium larrymoorei: CFBP5473_01110
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Entry
CFBP5473_01110 CDS
T06268
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
alf
Agrobacterium larrymoorei
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alf03400
]
CFBP5473_01110 (addB)
Enzymes [BR:
alf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFBP5473_01110 (addB)
DNA repair and recombination proteins [BR:
alf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CFBP5473_01110 (addB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QCI96635
UniProt:
A0A4D7DJR3
LinkDB
All DBs
Position
circular:228893..232120
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AA seq
1075 aa
AA seq
DB search
MRSEPSLPPYSSKKVEPLAHAKRILTIAPGTPFLKVLARSLCDGSLAQGYAYDPADPLSL
AKVTIYVPTRRSARVLRSEFVDILGGRSAILPVIRPLGETDDDSGYFDIETPATIDLAPP
ISNTARLVELARLILAWRNSLPDAIRAVHSDSPLVAPASPADAIWLARALAEVIDAMDTE
DKDWEALAELDTADHAQWWQLTADFLKIASVFWPARLAELNKSSAGRHRNAILRAEAERL
ARIGSTDPIIVAGSTGSIPAAADLIAAVASLPQGTIVLPGLDLDMPDEQWEAINEAPDDA
SSRTHSQYGLFVLLQKLGVLRDDVERIGSLDSDLQNRAEIFSTALAPAKATAEWNAWRAE
KSEEFFDNAFSSAAMIEAANEREEATSIAIALRLALEEPGQNGPSQAALITPDRGLGRRV
ATELARFGIEADDSAGTPLSATPQAGLLQLALEAILRPGDPVAIISLLKHPLSRFGLNLE
DMTQAAAAMELLGLRGGREETMLGNLGSLLAHQLTLHADDRHPPKWRTALSEDAALAAAD
LAARIKVAIEPLESAFIHRDPIKGRLTSRLTLADWAERTGRVIEAIAVDEAGDLANLWSG
EAGEKLSGLLAELMECGQVLEADGPQWIDIVAAFVAGESIKPRAMRHPRVFIFGALEARL
QSVDTVIIGGLNEGIWPGQTANNPFLSRNMKTAIGLEPPERRVGQLAHDFEMANGTRHIF
YSRSLRQGSTPAVASRWLQRLLALGGENFAETLKARGESYRHWANMLDDGDIQDAAKRPA
PTPPAELQPKSYSFSEVSRLRRDPYSIYARRILKLDPLDEFNRDPGAADRGTLYHRIMEQ
YSREEHVPGTPAAEKAMMRVLNACFDAENLPSHIDVVWRPRFVAVARAFLNWEKDRRQIV
RRSHIEVRAGQEIPEAGVRLTGVADRIDIKTSGKADIIDYKTGLSPSVKQARSLLDPQLA
LEAAALMRGAFRDTGSPTPEDLIYVRLRPGERFGSDTVNNENAKATAKTVPKSAVELATD
SIDQLSKFIISLRERKNGFVSRLIPEEQQSYGGEYDHLARVSEWSTAEPGDGDAE
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgcggagcgaaccatcgcttccaccctatagcagcaagaaagtcgagccattggcgcat
gctaaacgcatcctgaccatcgcgccgggaaccccgtttcttaaagtcctggcaaggagc
ctctgcgatggttctctggcgcagggttatgcctatgatcctgccgatccgctgtcgctt
gccaaggtcacgatctatgtgccgacgcggcgttccgcgcgcgtgttgcgctcggaattc
gtcgatattctcggcggtcgctccgccattctgccggtcatccgtccgctcggcgaaacg
gatgatgatagcggctatttcgatatcgagacgcctgcaacgatcgatctcgccccgccg
atttccaatacggcccgactggtggaattggcccggctgatccttgcatggcgaaacagc
ctgcccgatgcgatccgtgccgtacactccgattccccgctcgtcgctccggccagccct
gcggatgccatttggcttgctcgtgcactggccgaagtcatcgacgcgatggacaccgag
gacaaggattgggaggctctcgccgaactggatactgccgaccatgcgcaatggtggcag
ctgacggcggattttctcaagatcgccagcgtcttctggccagcccgccttgccgaactc
aacaaatcatccgccgggcggcaccgcaatgcaatcctgcgcgccgaggctgagcgtctg
gcgcggatcggctcgactgacccgatcatcgttgctggttctaccggctccattcctgcc
gctgccgatctcatcgccgccgtcgcctcgctcccgcagggtaccatcgttctgccgggc
ctcgatctcgacatgccggacgagcagtgggaggcgatcaacgaagcgccggatgacgca
tccagccgcacgcattcgcaatacggccttttcgtcctgttgcagaaactcggtgtgctg
cgcgatgatgtcgagcggatcggttcgctggattctgatcttcaaaaccgcgctgaaatc
ttctcgacggcgcttgcacctgccaaagccacggcggagtggaatgcatggcgcgcggaa
aaatccgaggaatttttcgacaacgccttttcttccgccgccatgatcgaggctgccaat
gagcgggaggaggcaacttccattgcgattgcccttcgcctggcccttgaagaacccggc
cagaacggcccttcgcaggcggcactgattacgccggatcgtggtcttggacgacgtgtc
gcgaccgagcttgcgcgcttcggcatcgaggcggatgactctgccggtacgccgctttcc
gcaacgccacaggcggggctgttgcagcttgcgctcgaagcgatcctgcggcccggcgat
cccgtcgccatcatatccctgctgaagcatccgctcagccgcttcggtcttaatctggag
gacatgacacaggcagcggcggctatggagcttctcggcttgaggggcggacgcgaggaa
accatgcttggcaatctcggtagccttctcgcgcatcaactgacattgcacgcggatgac
agacatccaccgaaatggcgtaccgcgctttccgaagacgcggcccttgctgccgctgat
ctcgccgcgcgtatcaaggttgccatcgaaccgctggaatcggccttcatccaccgcgat
ccgatcaaaggacgcctcacctcccgcctgacgctggcggattgggcggagcgtacaggc
cgcgtcatcgaagctattgctgtggatgaggcgggcgatcttgccaacctctggtcgggc
gaagcgggagagaagctctccgggcttctggcggaattgatggaatgcgggcaggttctg
gaggcggacggtccgcaatggatcgacatcgtcgcggcattcgtggccggtgaatcgatc
aagccacgcgccatgcgccacccgcgcgtcttcatcttcggcgcgctggaagcccgcttg
cagagcgttgataccgttatcatcggcggcctgaacgaaggcatctggccggggcagacc
gccaacaacccattcctgtcccgcaatatgaagacggccattggtctcgaaccgccggaa
cggcgggtcgggcagcttgcgcatgatttcgaaatggcgaacggcacgcggcatattttt
tacagccgttcgctgcggcagggctcgacgcctgccgtcgcgtcccgctggctgcaacgg
cttctggcacttggtggtgaaaattttgccgagacgctgaaggctcggggtgaatcttat
cggcattgggcaaatatgctggacgatggcgacattcaggatgccgccaagcgccctgcc
ccgacaccgcctgcggagcttcagccgaagagctattctttcagcgaagtcagccgcctg
cgccgggatccctattcgatctatgcacggcgcatcctgaagctcgatccgctggatgaa
ttcaaccgcgatccgggtgcggccgaccgcggtacgctttatcaccgcatcatggagcaa
tattcgcgcgaggagcatgtgcccggcacgcctgcagcggaaaaggccatgatgcgggta
ctgaatgcctgtttcgacgcggaaaacctgccttctcacatcgatgttgtctggcgaccg
cgtttcgttgccgtggcccgtgccttcctgaactgggaaaaggaccgtcgacagatcgtt
cgccgtagccatatcgaagtgcgggcaggtcaggagataccggaagcgggcgtacggctc
accggtgttgccgatcggatcgatatcaaaacctcaggcaaggcggatatcatcgattac
aaaaccggcctttccccctctgtcaaacaggcgcgctcgctgctcgatccacagttggct
cttgaggccgcagcgctgatgcgcggcgcgtttcgtgatacgggatcgccaacgcccgaa
gatttgatctatgtgcgattacggcccggcgaacgcttcgggtctgataccgtcaataac
gagaatgccaaagccaccgcaaaaacggtaccgaagagcgctgtggaactcgcgaccgac
tccatcgaccagctgagcaagttcatcatttccttgcgcgagagaaagaacggcttcgtc
tcccgcctgatacccgaggaacagcagagctatggtggagaatatgaccacctcgcccgg
gtttccgaatggtccacggcagaaccgggagatggcgatgcggaatga
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