Aquicella lusitana: AQULUS_09820
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Entry
AQULUS_09820 CDS
T06205
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alg
Aquicella lusitana
Pathway
alg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AQULUS_09820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alg03400
]
AQULUS_09820 (mfd)
Enzymes [BR:
alg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AQULUS_09820 (mfd)
DNA repair and recombination proteins [BR:
alg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AQULUS_09820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
VVC73250
LinkDB
All DBs
Position
1:complement(1050710..1054153)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSNANLFHPPLPQQAGERLHWKNLYGASTGLALAQVIAERKQPFLIIAQDSLAVSHLIDE
LQFFGNAAETLLTFPDWETLPYDHFSPHQDIISERLSALYRIPTLGTGAIITTVSTLMHS
LPPSDFLEGHSFLLKLGDLLNIDILRTRLTKAGYHAVSQVREHGEFAIRGSIIDLFPMGS
RTPFRIDLFDNEVDSIRVFSPDTQRSLEKLTEIRLLPAKEFPLTENAIEHFRQAWRSQFG
GNPLKSPIYQDISEGICSPGIEYYLPLFFDKTATLFDYLPDNTCVVSIGDLEAKAVEFWQ
EIEMRYEQGRHDTSRPLLSPKSLFVSAQSLKLSLRDYPQISINHHEIKDTYTFATEAAPS
LDIDHKATQPLAALQKFAADYPGRLLFCAETAGRREVLLQLFRTISLSPTYFHSWREFLA
SDKTRGIVVAPLEEGFCLSDLALTLLTETQLYGKRVMQRRLRKKSVQDPDALIRDLTELQ
IDDPVVHIDHGVGRYRGLQTLKVGDQVAEFLCLEYQGGDKLYVPVASLHLISRYTGTDLE
HTPINKLGTENWQRAKRKAAEKVRDVAAELLDLYAKRAARPGHKYTLPDEQYAAFAAAFP
FEETPDQLQAIEQVFNDMTSDKPMDRVICGDVGFGKTEVALRAAFLAVQNGKQVALLVPT
TLLAQQHFQNFQDRFADWPIQVEMLSRFRTGKEQKNILQRMENGKIDIIIGTHKLLQQDI
KFKSLGLVIIDEEHRFGVKQKEKLKALRTTIDMLTLTATPIPRTMNMALSGIRDLSVIAT
PPARRLSVKTFVHEYNDAIIQEAIQREIMRGGQVYFLHNDITTINKKAEEISTLVHEARP
TVAHGQMHERELERVMSEFYHRHFNVLVCSTIIESGIDVPTANTIIINRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLIPSREHITDHAAKRLDAIAALDDLGIGFTLATHDLEIRGAGEL
LGEEQSGEMQEIGFTLYMDLLSRAVDALKAGKEPDFDKSLLHQGSEIDLHLTALIPENYL
GDVQLRLQFYKRIATAKETAELDEIQVEMIDRFGLLPDQLKNLFALTELKLKAEKLGIIK
LEAGEKGGKFEFSERPQVKPETIIRLIQTKPQQYRLDGPTRLRFTLDTHEPKERIGRVEK
LLDELFD
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgccaacctatttcatccgccgctgcctcaacaagccggcgagcgactgcat
tggaaaaacctttatggtgcaagcaccggccttgcgctcgcccaggttattgctgagcgc
aagcaaccttttctcatcattgcgcaagatagcctggctgtttcgcatcttattgatgaa
ttgcaattttttggaaacgcagcggaaacattgcttacgttccctgattgggaaacactg
ccttatgatcatttttctccccatcaggacatcatttccgagcggttatctgcactctac
cgtattccgacgcttggtacaggcgccatcatcaccaccgtctcaacgctcatgcacagc
ctgccgcccagcgatttcctcgaagggcacagctttctcctcaaactgggcgatctcttg
aatattgatattctcagaacacggctgacgaaggcaggttatcatgctgtcagccaggtg
agggaacacggcgaatttgctatccggggatcaattattgatctctttcccatgggcagc
agaaccccttttcgtattgatctcttcgataatgaagtcgattccatacgcgtgttttca
ccagacacgcagcgctccctggaaaaattgactgaaatacgcttattgcccgctaaggaa
tttccgctaaccgagaacgccatcgagcatttcagacaggcttggcgcagccagtttggc
ggcaatccgctcaaatcgcccatttatcaggatatcagtgaaggaatatgctcacccggc
atcgaatattatttaccgctattttttgataaaacagccacgctttttgattatctccct
gataacacctgcgttgtcagcataggcgatttagaagcaaaggcggttgagttctggcaa
gaaattgaaatgcgatatgagcagggccgacatgatacatcaagaccgctgctttcaccc
aagtctctttttgtttctgcacaatcgcttaaattgtcgctgcgtgattatccacaaatc
agtatcaatcatcatgaaataaaggacacttataccttcgcgaccgaggctgcgccctct
ctcgatattgatcacaaagcgactcaaccgcttgctgcactgcaaaaatttgctgcggac
tacccaggccgcctgctattttgtgcagaaactgcgggaagacgcgaggttcttttacag
cttttccggacaatttcactctcacctacttattttcattcctggcgggaatttttagca
agtgacaaaactcgcggcattgtcgtcgcgccgctagaagaaggcttttgtcttagcgat
ctcgcactgaccctgctcacagagacgcagctgtatggcaaacgcgttatgcaacggcgt
ctgcgaaaaaaatcagtgcaagatcctgacgctcttatccgcgatctcacggaattacaa
atcgatgaccccgtcgtacacattgatcatggcgttggccgttaccgcggcctgcaaaca
ttaaaagtgggcgaccaagtcgcggagttcttatgcctagaatatcaaggtggcgacaaa
ttatatgtgccagttgcatcactgcacctgattagccgctacaccggcacagacctagaa
catacgcctattaataaattgggtacagaaaactggcagcgtgccaaacgtaaagcggca
gaaaaagtacgagatgtagcggccgagctgctcgacttgtatgccaaacgcgcagcccgg
ccaggacataaatatacgcttccggatgaacaatatgctgcttttgctgcagcatttcct
tttgaagaaacacccgatcagctgcaagccatcgagcaagtgtttaacgatatgacctct
gataagcccatggacagagtcatttgcggcgatgtgggtttcggcaaaacggaagtcgcc
ctgcgcgccgcgttcctcgccgtgcaaaacggcaagcaggtagccttattggtacccacc
acactgctagcacagcagcatttccagaatttccaagaccgctttgctgactggcctatc
caggttgagatgttgtcgcggtttcgaaccggcaaggaacagaaaaatattttgcagcgc
atggaaaatggaaaaatcgatattatcattggcacacacaagctattacagcaagatatt
aaatttaaatccctgggccttgtcattattgacgaggaacatcggtttggcgtaaagcaa
aaagaaaaattgaaggcgctacgcacgaccattgacatgcttactcttacggctacacct
attccgcgcaccatgaacatggctttgtccggcattcgcgacttgtctgtgatagccaca
ccacctgcccgccggttatccgttaaaacatttgtccatgaatacaacgatgccattata
caggaagcgatccagcgcgaaatcatgcgcggcgggcaagtttactttttgcataacgac
atcaccacgatcaataaaaaagccgaggaaatttcaacattggtacatgaagcgcgacct
actgtcgcacatggacaaatgcatgaacgtgagctggaacgcgtgatgtctgaattttat
catcgtcatttcaatgtacttgtctgctccaccatcattgaaagcggtatcgatgttcct
accgctaacacgattattattaatcgtgctgacaaatttggcctggctcaattgcatcaa
ttgcgtggccgcgtgggacgttcgcatcatcaggcttatgcttatctcttaattccttcc
cgggagcatatcaccgatcacgctgccaaacggctcgatgccattgccgccctggacgat
ttgggcatcgggtttacactggccacgcatgatcttgaaattcgcggcgcaggtgaatta
ctaggcgaagaacaaagcggcgaaatgcaggaaatcggctttacgctttatatggattta
ctatcccgggctgtggatgcattgaaagcgggtaaagagcccgattttgacaaatcattg
ttgcatcaaggctccgaaattgatttacatctaaccgcgctcataccggaaaattatctg
ggtgatgttcaactacgcctgcaattctacaaacgcatcgccaccgcaaaagaaacagcg
gagctggatgaaattcaggttgaaatgattgaccgttttggactgctgcccgatcagctc
aaaaatctttttgctctgactgaactcaaattgaaagccgaaaaactgggcattatcaaa
ctagaagctggtgaaaaaggcggcaaatttgagttttctgaaaggccacaggttaaaccg
gaaaccattattcgcctcatccaaaccaaaccgcagcagtatcgcctcgacggccccact
cgactgcgatttacgctggatacccatgaacctaaagaacgcataggccgggtggagaaa
ctgcttgatgaactatttgattaa
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integrated database retrieval system
