Aquicella lusitana: AQULUS_12720
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Entry
AQULUS_12720 CDS
T06205
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
alg
Aquicella lusitana
Pathway
alg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AQULUS_12720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alg03400
]
AQULUS_12720
Enzymes [BR:
alg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AQULUS_12720
DNA repair and recombination proteins [BR:
alg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AQULUS_12720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
VVC73529
LinkDB
All DBs
Position
1:1369431..1371962
Genome browser
AA seq
843 aa
AA seq
DB search
MQLTYFGRMKLKKYRSKRNFKKTTEPFGKISRGKKRLYVIQKHAASHLHYDFRLELDGVL
VSWAIPKGPCLDPAIKRLAVHVEDHPIEYGSFEGIIPKGQYGGGTVMLWDRGRWIPNDKD
SALAYQKGDLNFTLEGKKLNGQWKLLRIYQDDKTWLLIKKKDKYAKPLKQYDVLTEKPNS
VLTQKTINEIAESQSTARKNTLTKKTCQHKQPAKSAINKLLSKLKSAPMPKMISPQLATL
VDQPPTGKQWLHEIKLDGYRILAYKKGDRVQLFTRNHKDWTNKFKMVADAVRQLPIENAI
LDGEIAVLDENQHTNFQLLQNAIKDQNKPFIYYLFDLAYINKYDLSALPLIKRKKMLHLL
VPSAEGDILRYNDHIVGSGKEVFKKSCELALEGIVSKEANSPYLQKRSRNWLKIKCLKRQ
EFIIGGFKAPQGHRQYFGSLFLGAYNKRHELIFHGNVGTGFTQSSLKTIHDLLVKYKTKE
MPFKKRPPESKNATWVKPVLIAEIEFTEWTEDGLLRQPRFKGLRSDKPAREITIEPELII
DNLSPSQQATAEKNTQKTFKLTNPNKILYQEDKITKQDLADYYDQISEWMLPHIINRPLT
LVRCPDNYRDCFYQKHLPSGVPPSLYEVIIKEKKGKEKHFYIKDKQGLLTLVQLGALEIH
PWGCKVDDIEYPDIITFDLDPAPDVPWKRVVAAAFEIKEHLSKFKLKCFVKATGGKGLHI
VIPIKPEYSWEEVKTFSQVFADFMVMNDPMNYISKMGKAKRKGKIFIDYLRNQRGATAIA
PYSTRARKHAPVAVPLDWDHLTADRKDTIYTLKTLPAHLQSLRKDPWKNFLKLHQSLHLD
ELE
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaacttattttggtcgcatgaaactaaaaaaatatcgctcaaaaagaaatttt
aaaaaaacaaccgaaccttttggaaaaatttctcgcggcaaaaaacggctatatgtaata
caaaagcatgcggccagccatttgcattatgattttcgacttgaattagacggcgtgtta
gttagctgggccattccaaaaggcccttgcctggatcccgccattaaacggctggcggtc
catgttgaagatcaccccattgaatatggcagcttcgaaggtattattcccaaaggacaa
tatggcggaggcactgttatgttatgggatcgaggtcgttggattcctaatgacaaggat
tccgctttggcataccagaaaggtgacttgaattttacgcttgaaggcaaaaaattaaat
ggacaatggaaactgcttcgcatttatcaagatgacaaaacatggttattaattaaaaag
aaagacaaatacgcgaaaccactgaaacaatatgatgtcctaactgaaaaaccgaatagc
gtcctcacccagaaaacgattaatgagatagccgaaagccaaagtaccgcaagaaaaaat
accctcaccaaaaaaacttgccagcacaagcaaccggccaagtccgctataaataaatta
ctgtcaaaattaaaatcggctcccatgccaaaaatgatttcaccacaacttgctacactc
gttgatcagcctccaacaggaaagcaatggctccatgaaatcaaattggatggttatcgc
atccttgcttataagaaaggcgatcgcgttcaactattcactcgcaaccataaagactgg
actaataaattcaaaatggtagctgatgccgttagacaattaccgatagaaaatgcgatt
ctcgatggtgaaatagctgtgcttgatgaaaatcagcatactaatttccaattattgcaa
aatgcgattaaagatcaaaataaaccgtttatctattatctgttcgatcttgcttatatt
aataaatatgatcttagcgcgttgccactgattaaacgaaaaaaaatgttgcatctactc
gtgccatcagcggaaggtgacattctgcgttataacgatcatattgttggatccgggaaa
gaagtatttaaaaagagttgtgaattggcgctagaaggcattgtttcaaaagaagctaac
agcccttatttgcaaaaaaggagtaggaactggctgaaaattaaatgtcttaaacgccag
gaatttatcattggcggctttaaggcaccgcaaggccatcgtcagtattttggctcgctc
tttttgggcgcttataacaaacgtcatgagctgatcttccatggcaacgtaggcacagga
tttacgcagtcatcattaaaaacaatccatgacctgcttgttaaatataaaacaaaggag
atgccttttaaaaaaagacctccggaaagtaaaaatgcgacctgggtcaaacccgttctg
atcgcagaaattgaattcactgaatggacggaggatggattgcttcgccaaccaaggttt
aaaggcttgcgatctgataaacctgcacgcgaaatcacaattgagccagagttgatcatt
gacaatctttcgcccagccagcaagcaacagcggaaaaaaacacccaaaaaacatttaag
ctaaccaatcctaataaaattctctatcaggaagataaaattactaagcaagatttagct
gactattatgaccagattagcgagtggatgctgcctcatatcattaatcgcccgcttaca
ttggttcgctgcccggacaattatcgtgattgtttttatcaaaaacatctgccatccggt
gtgccgccttcactttatgaagtcatcataaaagagaaaaaaggaaaagaaaaacatttc
tatattaaagacaagcagggattgctaacattggttcaattgggcgcgctagaaattcac
ccctggggatgcaaagtcgacgatattgaatatccggatattatcacctttgatctggat
cctgctcccgatgtcccctggaaaagggtagtcgcggctgcttttgaaataaaggaacat
ctgtccaaattcaagttaaagtgctttgtaaaagccacgggtggtaaaggtttgcatatt
gtcatcccaatcaaacctgaatattcgtgggaggaagtgaaaactttctcccaagtattc
gctgattttatggtaatgaatgaccccatgaactatatcagtaaaatgggcaaggcaaaa
cgaaagggcaaaatatttatagactatttgcggaatcaacggggcgcaacagcgattgcg
ccttattcaacacgtgcgcgaaaacatgcacctgtcgcagtgccacttgactgggatcat
ttaaccgcagaccgaaaagatacaatttatacattaaaaacgctgccagcgcacttgcaa
tccttgcgcaaagatccgtggaaaaattttttaaaattacaccaatcacttcatttagat
gaattggaatag
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