Aliiglaciecola sp. LCG003: QR722_11250
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Entry
QR722_11250 CDS
T09143
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
alii
Aliiglaciecola sp. LCG003
Pathway
alii03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QR722_11250 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alii03400
]
QR722_11250 (mfd)
Enzymes [BR:
alii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QR722_11250 (mfd)
DNA repair and recombination proteins [BR:
alii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QR722_11250 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
SecA_DEAD
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
YmdB
Motif
Other DBs
NCBI-ProteinID:
WJG07939
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All DBs
Position
2634129..2637620
Genome browser
AA seq
1163 aa
AA seq
DB search
MVANIFSPELPLKAGNIIHWGNLHGSSLALAIANGAKLNAGSTLLVTADTPTALKLEKEL
LFFLKSPQQQHIDVKLLPDWETLPYDNFSPHQDIVSQRLETLFELTQNKRCIFIVPVNTL
LLRMPPTDFMGQYLLILKTGQQLDINAFRSGLEKSGYQHVSQVMSHGEYSIRGSIVDLYP
MGSTDPFRIDLFDDEVDSISIFDPDNQRSGDKVYEIKMLPAREFPTDGPAIALFRQQYAE
KFEANNSKDSVYYQVGKGLMPGGIEYYLPLFFTHTATLFDYLHKDTLVMMNGDLSAACEF
YWADLTERYEQHRYNLARPLLPPQEVFQRYEELFAGLKQWPRIAISAQPIEMKNGRTNFS
TSAIGDIGIKHQNKVPWASLKSAVANWQKRGAKILFSAESQGRRENLLDLLSKAQIKAKS
FEDLSQFLTSHESIGIAIGLAEHSFQLLEQDGELAFITETQLLGHKVSQRRLRDKRQATD
ESAVIRNLAELTQGQPVVHLDHGVGRFLGLQTLDVGGVTTEYLTIEYAKEAKLYVPVAAL
HLISRYSGGDLDHAPLHSLGSDSWSKAKKKAAEKVRDVAAQLLDVYARRAAKPGYAYKIE
WPEYQAFADSFPFEETIDQQQAINAVIQDMGSPNAMDRLVCGDVGFGKTEVAMRAAFLAA
NEGKQVAILVPTTLLAQQHYENFKDRFAQCPFKIEVISRFISTKEQKEVMKGLADGKVDI
VVGTHKLLQDDIKFSDLGLVIIDEEHRFGVRQKEKFKALRSDVDILTLTATPIPRTLNMA
LSGMRDLSIIATPPAKRLAIKTFVQQRSKEMIREAIMREILRGGQVYFLHNSVDSIEKTA
QEIAEIIPEARVAIGHGQMRERELEQVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIMD
RADHLGLAQLHQLRGRVGRSHHQAYAYLLAPHPKRMTKDAKKRLDAISTLEDLGAGFALA
THDLEIRGAGELLGDDQSGQIATVGFSLYMDMLEQAVEALKEGREPSLDDALSAQTDIEL
RIPALLPDDYIGDVNTRLSLYKKLAGCKNQAAIREFQIELIDRFGLLPEAAKNLVQIAEM
KLDAKHVGVTKIDATVKGAVIEFAQNTKVELGYIIQLIQTKPNQFKLEGPQKLKIVINND
SPKSRIDAINNLLIDLKRQVRAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggtagcaaatattttttcgcctgaattaccgctcaaagcaggcaatataattcactgg
ggtaacttacacggtagtagtttggcactcgccatagccaatggggcaaagctaaatgct
ggctctacgttgctggtcaccgcagatacaccgacggcattaaagctagaaaaagagctg
ttgtttttcctaaaaagccctcaacaacagcacatcgatgtcaagctgttgccagactgg
gaaaccttaccctatgacaacttttcgccccatcaagatatcgtatcacaacgtcttgag
accttgtttgaattaacccagaacaaacgctgcatattcattgtgccggtgaatacctta
ctgttgcgcatgccgccaactgattttatgggtcagtatttacttattctgaaaacggga
caacagctcgatataaatgcatttcgatccggtctggaaaaatctggttatcaacatgta
agccaggtaatgagtcatggtgaatatagtattcgaggtagtatcgtcgatttatatccc
atgggcagtacggatcccttccggatagacttgtttgacgacgaagttgacagtattagt
atatttgatccagataatcagcgttccggtgataaagtctacgaaataaaaatgctgcct
gcccgagaattccccaccgatgggcctgcaattgcattgtttaggcaacaatacgctgaa
aagttcgaggcgaataacagtaaagattcggtttattaccaagtcggtaaaggcttgatg
cctggtggtattgaatattatctgccattatttttcacccatactgcaaccttatttgat
tatttgcacaaagacaccttggtcatgatgaacggtgacttgtctgccgcatgtgaattt
tattgggctgacttaactgagcgctatgaacagcaccgttacaacttggcccggcctcta
ttgccaccgcaagaggtctttcagcgatatgaagaattatttgctggtctaaaacaatgg
ccgcgaatcgccattagtgctcaacccattgaaatgaagaatggccgtactaattttagc
accagtgcaattggtgacatcggcatcaagcatcaaaataaagtcccttgggccagtttg
aagtcggctgtggccaactggcagaaacgcggtgccaagatcttatttagtgccgagtca
caaggtcgcagagagaacctattagatttattgagcaaagctcaaattaaagctaagagc
tttgaggatctcagccagtttctaaccagccatgaatccatcggtattgccataggctta
gctgagcacagttttcagcttctagagcaagatggtgagttggcgtttataaccgagact
cagttacttggtcacaaggtgagtcaacgtagattaagagacaaacgccaagccacagac
gaaagtgcggtgatccgcaatctagcggaattaacccaaggtcaacctgtggtccattta
gatcatggtgtcgggcgatttttaggtctacagaccctagatgtgggtggtgtaaccact
gaatacctaaccattgagtatgctaaagaggccaagttatacgttccagtggcggcgcta
catttgattagccgttatagtggcggcgatcttgatcacgccccgcttcactcattgggc
tctgacagttggagcaaagcgaagaaaaaagcggctgaaaaagtccgagatgtagcggca
caactgctcgatgtatatgcccgcagagccgctaaacccggctatgcatataagatcgaa
tggccagagtatcaagcctttgccgatagttttccctttgaggaaaccatagatcagcaa
caggctattaacgccgtcattcaagatatgggcagtcccaatgctatggaccgattagtc
tgtggggatgttggttttggtaaaaccgaagtagccatgcgcgctgccttccttgcagct
aacgaaggtaaacaggtagccatattggtaccaacaaccttattggcgcagcaacattat
gaaaacttcaaagacagatttgctcaatgcccgtttaaaattgaagttatatcccgtttc
atcagtacaaaagagcaaaaagaggtgatgaagggtttagcagatggaaaagtagatatt
gtggtaggcacccataaactattgcaagatgacattaaattcagtgatttgggtttagtg
attatcgatgaagaacatcgctttggggtgcgtcaaaaagaaaagtttaaagcattacgc
tcagatgtagatattctcacattgaccgccacccctattccacgaacgttaaatatggcg
ttgagcggtatgcgcgatctatccatcatagcgacaccaccggctaagcgtttggcgatc
aaaacctttgttcagcagcgcagtaaagagatgatacgagaagctatcatgcgagaaata
ctgcgcggtggtcaagtttactttttacacaactcagttgatagtattgagaagaccgcc
caagaaatcgctgaaatcattccagaagctcgggtagcaattggtcatggtcagatgcga
gagcgcgagcttgaacaggtgatgagtgatttttatcatcaacgtttcaacgtgcttgtg
tgtaccactattattgaaaccggaattgatgttccttctgctaacactattattatggac
cgagcggatcaccttggtctggcgcaactgcatcagttgcgcggtcgagtgggccgttcc
catcaccaagcatatgcttatttgttagcgccccaccccaagcgcatgaccaaagacgcc
aagaagcgcctagatgccatttcgactttggaagatttgggtgccggttttgcgttagct
acccacgatttagaaattcgaggagcgggagagctgttaggggatgaccaatccggccaa
atcgccactgtaggattctctttgtacatggacatgctggagcaagcggttgaagcatta
aaagaaggccgcgaaccttctttagatgatgccttgtcggcacaaactgacattgagttg
cgaatacctgcattactaccagacgattatattggcgatgtgaataccagattgtccttg
tataagaagctggcgggatgtaaaaatcaagctgcaattcgagagttccagattgaactc
atagaccggtttggtttactaccagaagctgctaagaacttggtgcaaatagcagaaatg
aaattagacgctaagcacgtgggcgtgaccaaaatagacgctacagtgaaaggtgccgtg
atagaatttgctcaaaatactaaggttgaactgggttatattatccaactcatacaaact
aagccgaatcaatttaagttagaaggtcctcagaaattgaaaattgttatcaacaatgac
agtcctaaaagccggattgacgccataaataatctgttaattgatttaaaacgacaagtt
cgggctgcataa
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