Austrofundulus limnaeus (annual killifish): 106519157
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Entry
106519157 CDS
T06063
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106519157 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alim03400
]
106519157 (lig4)
Enzymes [BR:
alim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106519157 (lig4)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106519157 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
106519157
NCBI-ProteinID:
XP_013866157
UniProt:
A0A2I4BEJ0
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MEGTSTSDAAGEPTVAAQVPFLHLCTTLEKIQRSKLRPEKSKILGEFLESWRKFHSALHE
NNXKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGSEANKLLNYRAP
TTSQGEAGDFASMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPSVSL
SEVSIELFSAFKPMLAAVANIRNVEKQMGNNPFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSHVVSCILDGEMMAYNPTAETFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNNQKFGKETLKKRHETLQTVFTPVKGRIHLVPKTEVRTTQQVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYMDGLMDELDLLIVGGYLGKGS
RGGMMSHFLCAVAEAAKPGEKPSVFHSFCRVGSGYTMKELYDLSLKLTKHWKVYRKNDPP
PSILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKDWYQCTT
LAELEQLRSKASGKLASRHLTLDGNEPQKKKRKLPAKPKKVIGVVDHFKPQDLSGVSKET
DMFEDVEFCILNGTEEHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENTRVKNLISSN
QHDVVWASWLLECLDQKAVVPWQPRHMIHMSPSTKEHFAREYDAYGDSYFVDTDEHQLRE
VFGRIGSTEGTAVSAAQVEERYGWDDLPTSMFRPCTVYPDVFADIGDPESAAPASCLDVR
ALEVRYHGGTVVRKLEEGVSHVIVEEETRLLALRTQRRRFRRKFKIVRDSWVTDSIEAGY
LLDDTHYLL
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttctacaagtgatgctgcaggggagccaaccgttgctgctcaggttcct
ttcttgcacttgtgyacaactttggagaaaatccagaggtctaaactgcgtccagaaaag
tccaagattcttggggagttcctcgagtcttggcgtaaatttcattctgccctccatgaa
aacaatcmcaaaactacagactccttctatcccgccatgcgtctcattgtccccccgttt
gagcgggagcgaatggcgtacggcattaaagaaagcatgcttgcgaagctctacatagat
gttttaggccttccgaagaatggttccgaggccaataaactgctgaactaccgtgctccg
accacgtcccaaggagaggctggagactttgccagcatggcgtactttgtgctaaagaag
cggtgcacaagccaagggaatctcagcatcaaagaagtcaatgactttctggactcggtg
gcgatcaacaacgctagcaagcagaaggaccaggtgaaaaagagcctgctgcacctcatc
actcagagctccgctcttgarcagaagtggctcatcagaatgattctgaaggacatgaag
cttggcatcagcaaggaaaccgtgctccaagtcttccacccagacgccgcggaactctat
aacgtcaacacggacctgaacaaggtctgccagcagctccacaacccctccgtgtcgctg
agtgaagtctccatcgagctcttctctgcgttcaagccaatgctggcggcggtggccaac
atccgcaacgtggagaagcagatgggcaacaaccccttctacatcgagacgaagctggac
ggggagcggatacagctgcacaaagatggagacgtgtacaagtacttcagccgaaacgct
tttgaatacacgcagcagttcggaggctcacccctcgagggttcgctgactccctatatt
cacaatgtcttcaaaagccacgtggtgagctgcatcctagacggcgagatgatggcgtac
aacccgacagcggagacgttcatgcagaaaggaagcaaatttgacatcaagaggctgatg
gacgactcggagctgcagacgtgtttctgcgtgtttgacgtcttgttggtgaataaccaa
aagtttggaaaagagaccctgaaaaagcgacacgagactcttcagaccgtcttcacacca
gtgaagggacggatacatttggtcccaaagacggaggtcagaaccacacaacaggtggtc
aatgcgcttaacgatgccatagacaacagagaggaggggatcatggtgaaagatcctttg
tccatttacaaaccagataaacgaggggagggctggctgaagataaagccagaatacatg
gacggcttgatggatgaacttgacctgctgattgttggcggctacttagggaaagggagt
cgaggaggtatgatgtcccatttcttatgtgcggtagccgaagctgcaaagcctggcgag
aagccatcagtgttccactccttctgccgcgtcggctcaggatacaccatgaaagagctg
tacgacctcagcttgaaactcaccaagcactggaaggtgtaccggaaaaatgacccgcca
ccgtccatcctgtgcgggacggagaaaccagaggtctacatcgagccttgcaactcggtc
atcatccaggtcaaagcggcagagatcgttggaagcgacatgtacaagaccaactgcacg
ctgcgcttcccccgaattgagaagatccgcgacgacaaggactggtaccagtgcaccact
ctggcggagctggagcagctccgcagcaaagcctccgggaaactggcctcgcggcacctc
accttggacggcaacgaaccgcagaaaaagaagaggaagctgccggccaaacccaagaag
gtgatcggcgtcgtcgaccacttcaagccccaggacctgtccggtgtctccaaggagacc
gatatgtttgaggacgtggagttctgcatcctgaayggcactgaagagcatccaaaggct
gagctggaaaagggcgtggccaggtgtggaggtatcgtggttcagaacccaggacgggac
acttactgcgtgatcgccggcgtagagaacacgcgcgtgaagaacttgatctcgtcgaac
cagcacgacgtggtctgggcctcctggctgctggagtgcctggaccagaaggcggtggtg
ccgtggcagccgcgccacatgatccacatgtcgccgtcaaccaaggagcacttcgccagg
gagtacgacgcctacggcgacagctacttcgtcgacacggacgagcatcagctgcgcgag
gtgttcggccgcatcggcagcacggaggggacggcggtgagcgcggcgcaggtggaggag
cgctacgggtgggacgaccttcccaccagcatgttcaggccctgcaccgtgtacccggac
gtgttcgctgacatcggggatccagaaagcgccgcgccggcttcctgtctggatgtccgc
gcgctggaggttcgctaccacggagggacggtggtgcggaagttggaggaaggagtttca
cacgtgatcgttgaggaggagaccagactcctggccctgagaactcagcgccgccgtttc
aggaggaagtttaagatwgttagagactcctgggtgacagattccatcgaagctggctat
ctgctggatgacacccactatttgctttga
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integrated database retrieval system
