Austrofundulus limnaeus (annual killifish): 106520801
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Entry
106520801 CDS
T06063
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03030
DNA replication
alim03410
Base excision repair
alim03420
Nucleotide excision repair
alim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106520801 (lig1)
03410 Base excision repair
106520801 (lig1)
03420 Nucleotide excision repair
106520801 (lig1)
03430 Mismatch repair
106520801 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alim03032
]
106520801 (lig1)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106520801 (lig1)
Enzymes [BR:
alim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106520801 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
106520801 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
106520801 (lig1)
DNA replication proteins [BR:
alim03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
106520801 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
106520801 (lig1)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
106520801 (lig1)
NER (nucleotide excision repair)
Other NER factors
106520801 (lig1)
MMR (mismatch excision repair)
Other MMR factors
106520801 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
106520801
NCBI-ProteinID:
XP_013868511
UniProt:
A0A2I4BL91
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MQRSIASFFQPKTKDKDNQKTAANETVKKPVKSPLKVQNGVQEADSPIKKVAKRSRQLLD
SDEDEAPAVKEQAATRGQGDKEAKAEEKKEAEFKAVPTPLSPPAAPATPVTPATPATPAS
SASPGTPSTPSSISPTGITKRKTARKMFPKRKLDESRSSSESPKEETEVIEEQGQQNKRA
RVESCVSRAGNADEPMEEGAKEERVEKAAAEANGPDEEVENKKKEGAEKAKEEEEEQVGK
KHSDEREKKAEGAGERNEAKEKTDDERRPTAAKEEVGAKGTRVTGSPKSQTAEKKQKEAK
EQKDKEPAKKTPISSFFAPRKAAVKTDKTETNEGEKKTNADKKNSGDESKDKKGNSTSGQ
TDYDPSRPNYHPVEHACWSQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLS
PDDLLCTVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVA
ESSRSNQRMMFQPANLTAAGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIV
RSLAGKLRIGLAEQSVLSALSQAVCLTPPGQAFPPAVLDAGKGMSAESRRAWIEEKSLIL
KQTYCEMPNYDVIIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAF
TCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKIKKDSVVSCVLDTEAV
AWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLR
ESFSEVEGEFQFARFIDSNNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWL
KLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDE
DLEQHYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVD
PEKGISLRFPRFLRIRDDKKPEDATSGAQIADLYKKQQQIQNQGDKADPEGYY
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcaacggagcatcgcatcattctttcagcccaagaccaaagataaggacaaccagaag
acagctgcaaatgaaaccgtgaagaagcctgtcaagagccccctgaaggtgcagaacggt
gttcaggaagcagattcacccatcaagaaggttgccaaacgcagccgtcaactcctggac
agcgatgaggacgaggctccggctgttaaagaacaagctgccaccaggggacagggagac
aaagaagctaaagcggaggagaagaaggaggctgagtttaaggccgtccccacaccgctg
tctccaccagcagcccccgccacacccgtaacccccgccactccagctaccccggcctct
tcagcttctccagggacccccagcactcccagttccatctccccgactgggatcaccaaa
cgcaagacggcgaggaagatgttccccaagaggaagctggatgagagcaggagcagcagc
gagagtccgaaagaggagacggaggtcatcgaagagcagggtcagcaaaacaaacgagct
cgtgtggagagctgcgtcagcagggcagggaacgccgacgaacccatggaggagggagca
aaggaagaaagggttgaaaaggcagcggctgaggctaacggaccagacgaggaggtggag
aacaaaaagaaagaaggagcagagaaggccaaggaggaggaggaggagcaggtgggaaaa
aaacactctgatgagagagagaagaaagctgagggggcgggagagcgaaacgaagcgaag
gagaagacggatgatgagagacggcccaccgctgccaaggaggaggtgggtgcaaagggc
acgcgagtcacggggagcccgaaaagccaaacggctgaaaaaaagcagaaagaggcgaag
gagcagaaagataaggagcccgccaagaaaaccccaatcagcagtttctttgctcccagg
aaagcagcggtgaaaacagacaaaacggagacgaatgaaggagagaaaaaaacaaatgca
gacaagaagaactcgggggatgagagtaaagacaaaaaaggaaactccacatcaggacag
acggactacgatccttcccgaccaaactaccacccggtggagcacgcctgctggagtcaa
ggccaaaaagtgccgtacttggcagtggctcgcacgtttgagaaaattgaagaggactct
ggcaggctgaggaacatcgagacgctgtcgaacctgcttcgctccgtgctgctgctctct
ccagatgacctgctgtgcacggtgtacctgtgtctgaaccagctgggccccgcctacctc
gggatggagctcggcgtcggggagacagtgctgatgaaagcggtcgctcaagccaccggg
cgtcagttggacaaaatcaaagcggaggcgcaggagaagggagayctgggcctcgtggcc
gagagctcccgcagcaaccagcgcatgatgttccagccagccaacctgaccgcggcgggc
gtgttcaagaaactgaaggaaatcgccagcatgagtgggaactcggccatgaataagaaa
atcgacatcatcaaaggcctctttgtggcatgccgcttttcagaggcccgctacatcgtc
aggtccctggccgggaagctgaggattggcctcgcagaacaaagcgtgctttccgctctg
agccaggccgtctgtttgaccccgcctggacaagctttccctcccgctgtgctcgacgcg
gggaagggtatgagcgccgagagcaggcgggcctggatcgaagagaagagtctgattctg
aagcaaacttactgcgagatgcccaattatgacgtcatcatccccgttttgctaaaagaa
ggcatcgaccagctgcccaaccactgcaagctaacgccaggtgtaccactgagacccatg
ttggctcaccctaccaaaggtgttggtgaagtgatgaagaggtttgacgaggcagcgttc
acctgcgagtacaaatatgacggagagcgtgcacagattcacattctggagagcggcgaa
gttcggatattcagccgcaaccaggaagacaacaccagcaaataccccgatatcatctct
cgcattcccaagataaagaaggactctgtggtgtcctgtgtcctggacaccgaggccgtt
gcctgggatcgcgagaagaaacagatccaacccttccaggtcctcaccacccgtaagaga
aaggatgtggacgcctcagagatcaaagtccaagtgtgcgtgtacgcctttgacctgctc
tatctcaacggagagtctctggtgcgacagccactgtgtcggcgtcgggagctgctgaga
gagagcttctcagaggtggagggagagtttcagtttgcccgtttcatcgattccaacaac
actgatgccatcgcagagtttctggagcagtctgtccgagactcctgtgaaggcctgatg
gtgaaaaccctggagaaggatgctacctacgagattgccaagcgctctcataattggctc
aagctgaagaaggattacctggatggagtgggggacaccgtagatctttgtgtgattggt
gcctatctggggaaaggaaaacggaccggcacttacggcggcttcctgttggcctgctac
gacgaagaaaacgaggagtttcagtccgtctgcaagatcgggacaggctttaaggatgag
gatctggagcagcattacaagtttttaaaggagcacatcctgcccaaacctcgagcctac
taccgcgtggaccaatcggcagagcccgacgtgtggctggacgccgtgcaggtctgggag
gtgaagtgtgccgacctctcgctgtcgcccgtctacaaggccgccatgggaatggtggat
ccagagaagggcatttctctccggttccctcgattccttcggatcagagatgacaagaag
ccagaggacgctacatccggagctcagatcgccgatttgtacaagaagcagcagcagatt
cagaatcaaggagacaaagctgacccggagggctactactga
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integrated database retrieval system
