Austrofundulus limnaeus (annual killifish): 106524828
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Entry
106524828 CDS
T06063
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03013
Nucleocytoplasmic transport
alim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106524828 (upf3a)
03015 mRNA surveillance pathway
106524828 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106524828 (upf3a)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106524828 (upf3a)
mRNA cycle factors
P-body specific factors
106524828 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
106524828
NCBI-ProteinID:
XP_013874263
UniProt:
A0A2I4C2P0
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
MEGAREMRSEKDQITAGKDKCLVEIQFRDIPREQENLPGNTKHKEEKKEVFTKVVIRRLP
PNLSKDQLEEQLSPLPCYDYFEFFPADQSLYPHLFSRAYINFKNTEDILLFRDRFDGYVF
IDNKGQEYPAVVEFAPFQKISKKKLKKKDAKVGSIEEDPEYKRFLENYSCDEEKSMANPE
TLLGEIEAKTKELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRK
RREEERRKRKEAEKQKKLSDKDIKIKLLKKSDKDDDGNSDQMKDKSDXGEPDRTKWEKAG
GQMKSKEPKEKCQTERDTEPREQQQQQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRK
DETKWGKGYCQDRAKKEGHHHGYSYCXDSGEKMGKEDREELSNRKERLRNKVSEKDRPTM
QLYQPGARSRKRMSSASKGYDCIPVGHSPDCRTEHCYEVVSMTTGLERGFEKNKDEQ
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggagggagctcgagaaatgaggtctgaaaaggaccaaataaccgcagggaaggacaaa
tgtctcgtggagatacagtttagagacatcccaagagagcaggaaaaccttcctggaaac
accaagcacaaagaggagaagaaagaagtatttacaaaggtggtgattcggaggctccca
cctaacctgtccaaggaccagctagaagaacaattgagtccacttccctgttatgattac
tttgagttctttccagcagatcaaagtctctatccccacctgttctccagagcgtatatc
aatttcaaaaacacagaggacatcctgctgttccgggacagatttgatggctatgtcttc
attgataacaagggccaagagtatcctgctgtggtagagtttgctccctttcagaaaatt
tcaaagaagaagctgaagaagaaagatgctaaagttggaagcattgaagaagacccagaa
tacaagcgtttcttggagaattactcctgcgatgaagaaaagtctatggccaacccggaa
acattgctgggggagattgaggccaagaccaaagagctcatagccaaacggacgacacca
ctgctggaatacatcaagaataagaaaattgaaaaacagaggataagagaagagaagaga
gaggagaggagaaggagagagcttgaaaagaaaagacaacgcgaggaggagaaacgaaag
cgtcgggaggaggaaagacgcaaacgaaaggaagccgagaagcagaagaagctgtccgat
aaagacattaaaattaagcttctgaagaaaagtgacaaagatgatgacggtaattcagac
cagatgaaggacaaaagtgatkcaggggaaccagacaggaccaaatgggaaaaagctgga
ggacaaatgaagtcaaaagaacccaaagagaaatgccagactgagcgtgacactgagcca
cgagagcagcagcagcagcagcatgggcgccgacagagagacaaagaccacagaggaaaa
gatgargagaggaaacggcagcgacaccactatgagtttgacaagtttatgaggcggaaa
gatgagaccaaatggggcaaaggatactgccaggaccgagccaaaaaagaggggcatcat
catggctactcttattgtcycgacagtggagagaaaatgggaaaggaagacagggaagag
ctgagtaacaggaaggaacgcctccgaaacaaggtgagcgaaaaggaccgtccaaccatg
cagctctatcagccaggagcacgcagcaggaaacgcatgagctcagccagtaaaggctac
gactgcatccctgtgggccactcacctgactgcaggacagagcactgttacgaggttgtt
tcaatgacaacaggyctggagagggggtttgagaaaaacaaagatgaacagtga
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